PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_8936_a_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 198aa MW: 22223.8 Da PI: 5.3257 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.2 | 5.1e-10 | 60 | 93 | 1 | 35 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 rg W +eEd++l+++v+ +G g+W++++r+ +R Neem_8936_a_2 60 RGLWKPEEDLILKNYVETHGEGNWAAVSRKSE-KR 93 788**************************998.66 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.756 | 55 | 110 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.48E-8 | 58 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-10 | 58 | 95 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0031 | 59 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-7 | 60 | 91 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.10E-7 | 63 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MCGSIMNYIQ DDSNILMQKL ETERYPQGLH TQYPSVISRK AKVKQINRAP HVTPLSTHKR 60 GLWKPEEDLI LKNYVETHGE GNWAAVSRKS EKRKAIDLGS SQNNGNSSNK KLPRLCDSQS 120 LPICSASTRN TLQGLDGDNK EEKNLANCVW ADDSGGSSFY YDDIESGLIP PNNATFVFDD 180 EPFIAYLDSF VVFEAFEN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 4e-14 | myb domain protein 82 |