PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_891_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 282aa MW: 30797.1 Da PI: 4.8424

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_891_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.9	7.5e-20	7	67	26	86
trihelix 26 lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ +++++s +++ ++l+ Neem_891_f_3 7 QVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESNVRDGTESFWVMRNDLR 67 6789******************************************999999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-9	11	62	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MAFGSGQVEP KWASVSSYCK RHGVNRGPVQ CRKRWSNLAG DFKKIKEWES NVRDGTESFW 60 VMRNDLRRER KLPGFFDREV YDILDGVAGD PSAAATPGLG LALAPVNAAE ETTEDTEAVF 120 DSGRTAAAED GLFSDFEQEE TGVSTEKDEA TAAAAAAATA KPISATMPIP EKQYQPNPRG 180 GHGEGTTTEK QLGASNPEIG STSHQDGRKR KRFTVEGDEE MSNLQNQLID VLEKNGKMLT 240 AQLEAQNNNF QLDREQRKDH ADSLVAVLNK LADALGRIAD KL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006420771.1	1e-155	trihelix transcription factor ASR3 isoform X1
Refseq	XP_024957969.1	1e-155	trihelix transcription factor ASR3
Swissprot	Q8VZ20	2e-91	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A067F3Y6	1e-153	A0A067F3Y6_CITSI; Uncharacterized protein
TrEMBL	A0A2H5PXD2	1e-153	A0A2H5PXD2_CITUN; Uncharacterized protein
TrEMBL	V4SAN3	1e-153	V4SAN3_9ROSI; Uncharacterized protein
STRING	XP_006487537.1	1e-154	(Citrus sinensis)
STRING	XP_006420771.1	1e-154	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	5e-89	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]