PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8798_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 529aa    MW: 59848.1 Da    PI: 7.9328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8798_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.00061437460629
                    HHHHHHHHHHHHHHHHHHHCTSCC CS
            HLH   6 nerErrRRdriNsafeeLrellPk 29 
                    n++ +rRR++iNsa +++++++ +
  Neem_8798_f_1 437 NMVSKRRRAKINSAKARIKKIMHP 460
                    8999***************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.106.6E-7130No hitNo description
PfamPF082711.4E-6137IPR013137Zinc finger, TFIIB-type
PROSITE profilePS511347.701130IPR013137Zinc finger, TFIIB-type
SuperFamilySSF577831.3E-5236No hitNo description
Gene3DG3DSA:1.10.472.101.4E-562161IPR013763Cyclin-like
SuperFamilySSF479544.59E-672159IPR013763Cyclin-like
SuperFamilySSF479541.7E-6195260IPR013763Cyclin-like
Gene3DG3DSA:1.10.472.107.8E-5199258IPR013763Cyclin-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0001093Molecular FunctionTFIIB-class transcription factor binding
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0070063Molecular FunctionRNA polymerase binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MSCSSCGSKS LTRDDISGNL ICASCGTVQK FDNYDSQIHG HDGPTGTYVH VGTSGTGSVL  60
NYKDKKLYES QKLIDEYIYK LNLTQRGVEI RKMIDKITEG EFGLGEWFPI LIGACSYVVM  120
RKDNKSLPIA EIASVLNCDV YELGRMITCV VEFLNLKLPE LDLVILFERM IRNSKQPKLT  180
ELEGEKLERI KKQVVFLLNC AVKWFLTTGR RPMPVVVSVL VFVAEINGVG LKIEDVAKEV  240
HCVLSTCRRR YSELLEALVK VAQALPWGKD VNVKNIVKNA QFVMGYMEMK SMEKRKGEKE  300
VLEYDGIDLG DVVGECLKKD IEREIDEYGQ ENNVQNVDVN DRSGVARTVV GNGGEIKLSH  360
ECLRMIYTKF SNEVDSRRFS GESGEVHGRK LSRGFDLSEC REWWNGSSQF SKKLMLEKIL  420
EKDVGLDTMP PSFVKGNMVS KRRRAKINSA KARIKKIMHP SAAVAGDTDN ACFSESVDGK  480
RRKRKRVGEL DWEDFIIETL LLHQVKEEEI EKGYYKTLLD LHVFNSGVM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1479485KRRKRKR
2480485RRKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436968.10.0plant-specific TFIIB-related protein PTF2
TrEMBLA0A067EUS00.0A0A067EUS0_CITSI; Uncharacterized protein
STRINGXP_006436968.10.0(Citrus clementina)