PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_8761_f_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 288aa MW: 32335.5 Da PI: 5.5772 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2.1e-17 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl Neem_8761_f_7 21 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 68 788*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.973 | 16 | 72 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 18 | 71 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-12 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 21 | 68 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.88E-21 | 23 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.58E-12 | 24 | 68 | No hit | No description |
PROSITE profile | PS50090 | 4.217 | 69 | 103 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-8 | 72 | 95 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901430 | Biological Process | positive regulation of syringal lignin biosynthetic process | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MEKERFGKQP AKFGIGGKVK RGLWSPEEDE KLIRYITTHG YGCWSEVPEK AGLQRCGKSC 60 RLRWINYLRP DIRRGRFTPE EEKLIISLHS VVGNRLLYKI MARSNLAVKL VANAAIRHLG 120 GDLGNQDLTT RPPVQETLFS SPCPLFMFDP TPLDGITDHH NVRADQLFHE SASLNNETWN 180 ANQHQVQAVL PPSTSFTTGM ETHYLPPLIE NMENMVPMDH VQSCSMDEEG EIALDCLQRQ 240 ELNEWVESQH SSFLFSWENV EGQLGGGEEI APASSNTGAT LSSFPSSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-13 | 21 | 117 | 7 | 105 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 6e-43 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006476502.1 | 1e-136 | transcription factor MYB10 | ||||
TrEMBL | V4THA6 | 1e-135 | V4THA6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006439482.1 | 1e-136 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8760 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 1e-59 | myb domain protein 103 |