PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8651_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TALE
Protein Properties Length: 654aa    MW: 72856.2 Da    PI: 6.3614
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8651_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-094104471954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yps +e+  LA+++gLt +qV +WF N R +
  Neem_8651_f_2 410 FEHflHPYPSDSEKFTLARETGLTRNQVANWFINARVR 447
                    664459******************************88 PP
2BELL122.32.1e-39274345172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    erq+lq+kk+kLlslleeVd+rYkqy++q+q+++ssF+ v+g g+ak+Yt+lAl++iSrhFr+L+dai++qi
  Neem_8651_f_2 274 ERQDLQNKKTKLLSLLEEVDRRYKQYYHQMQILMSSFDLVVGNGAAKSYTALALQTISRHFRALRDAISGQI 345
                    799********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.5E-61188343IPR006563POX domain
PfamPF075261.3E-48194342IPR006563POX domain
PROSITE profilePS5007112.665388451IPR001356Homeobox domain
SMARTSM003893.7E-10391455IPR001356Homeobox domain
CDDcd000869.49E-13391452No hitNo description
SuperFamilySSF466893.64E-17392458IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-27394457IPR009057Homeodomain-like
PfamPF059203.4E-17408447IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MVYLCHSSAT TGPEMAAYNP GLSNQREGFP TLFPGPSSSH PDNINMYVNQ ASSAGSYSEI  60
FPVGSSLSHQ SCVEIPSTGG RNKKMFIPST SDTLILSSIN GQLNTGTVSV PSFQYQYSSP  120
CFSSFLRTHL LIPGKVTMPC QDDESEKRKE LRTSEGLLSS LEIESLCNTR YSVGHKEMYS  180
NAYQYEPINF TNTILKSKYL KPAQQLLDEV VNVQKALKQP NSNKEQNCNG NCLDDTKGTD  240
GRSNSLSKLP ATDGRSSNPM ESFANSSSEL SQAERQDLQN KKTKLLSLLE EVDRRYKQYY  300
HQMQILMSSF DLVVGNGAAK SYTALALQTI SRHFRALRDA ISGQIQVTRR SLGEQESSSN  360
GQVTIPRLRF VDHQLRQQRA LQELGVMRHA WRPQRGLPES SVSILRAWLF EHFLHPYPSD  420
SEKFTLARET GLTRNQVANW FINARVRLWK PMVEEMYKEE FGNPEENSNS CPENVQKACS  480
ENSSAPENRG EEMQDSLTSK SGKQVHDLKF DHIPDIEMNK SVASSAFHEG DHGDNVFNSG  540
IMRLQDERPS INDHRLYNII PQNQTGNDVL MGATGTYGMS ELSGFGVSNQ VTLALGLRHH  600
ESDIFPISAG NNIGGGDNTV APSVEHDAVD YHCMDMGNPQ DKFGNPHLLH DFVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A7e-17397455563Homeobox protein Meis2
4xrm_B7e-17397455563Homeobox protein Meis2
4xrs_A6e-17397454158Homeobox protein Meis1
4xrs_B6e-17397454158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435065.10.0BEL1-like homeodomain protein 3
RefseqXP_006473564.10.0BEL1-like homeodomain protein 3
RefseqXP_006473565.10.0BEL1-like homeodomain protein 3
RefseqXP_024040000.10.0BEL1-like homeodomain protein 3
RefseqXP_024040001.10.0BEL1-like homeodomain protein 3
RefseqXP_024952271.10.0BEL1-like homeodomain protein 3
TrEMBLV4T9Y10.0V4T9Y1_9ROSI; Uncharacterized protein
STRINGXP_006473564.10.0(Citrus sinensis)
STRINGXP_006435065.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-113BEL1-like homeodomain 7