PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_8642_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 109aa MW: 12684 Da PI: 4.4887 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.8 | 8.9e-12 | 18 | 48 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 rg+WT+eEd +l+++++ +G ++WktIa + Neem_8642_f_1 18 RGAWTPEEDRRLAECIEVHGAKRWKTIAIKS 48 89*************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-10 | 11 | 52 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.52E-8 | 12 | 47 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.183 | 13 | 63 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0099 | 17 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-9 | 18 | 46 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.43E-6 | 20 | 45 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MAPKDINQYA SAKKAINRGA WTPEEDRRLA ECIEVHGAKR WKTIAIKSET IPEKTSDVNH 60 MKEQAVKDFE NSELNFDFST EESYGLNLDW ADKFLQLDDN FWLTEEEKS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B9T9W4 | 2e-23 | B9T9W4_RICCO; Uncharacterized protein | ||||
STRING | XP_002535033.1 | 3e-24 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 4e-07 | myb domain protein 118 |