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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_8582_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 237aa MW: 27074.5 Da PI: 10.0176 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.9 | 9.6e-32 | 24 | 74 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ Neem_8582_f_1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 74 79***********************************************95 PP | |||||||
2 | K-box | 74.6 | 2.7e-25 | 101 | 190 | 3 | 92 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 +++++ +ee+ +qqe+akL+ +i+nLq+++R++lGe+L+ Ls+keL++Le++Lek++++iRskK+ l+++ + l+ k e+++ ++ Neem_8582_f_1 101 NAQDNGVEEERFVFYQQEAAKLRVQISNLQNSNRNMLGESLSALSVKELKNLETRLEKGISRIRSKKEIELHNNNQLLRAKIAENERGQQ 190 567888999*********************************************************************999998887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-42 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 34.09 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.87E-45 | 17 | 93 | No hit | No description |
SuperFamily | SSF55455 | 1.23E-33 | 17 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-33 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.6E-27 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-33 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-33 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.983 | 112 | 198 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.0E-18 | 114 | 185 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAFPNESREE SPKRKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 IVFSSRGRLY EYSNNSVKST IERYKKASAD SSTTGSVSEA NAQDNGVEEE RFVFYQQEAA 120 KLRVQISNLQ NSNRNMLGES LSALSVKELK NLETRLEKGI SRIRSKKEIE LHNNNQLLRA 180 KIAENERGQQ SMNLMPGGSS YEIIQSQPFD SRSYFQVNAL QPTNHYPRQD QMAIQLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
5f28_A | 3e-21 | 16 | 100 | 1 | 87 | MEF2C |
5f28_B | 3e-21 | 16 | 100 | 1 | 87 | MEF2C |
5f28_C | 3e-21 | 16 | 100 | 1 | 87 | MEF2C |
5f28_D | 3e-21 | 16 | 100 | 1 | 87 | MEF2C |
6c9l_A | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN050854 | 1e-65 | JN050854.1 Mangifera indica cultivar SiJi AGAMOUS-like protein (AG1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449577.1 | 1e-143 | floral homeotic protein AGAMOUS | ||||
Swissprot | Q40872 | 1e-119 | AG_PANGI; Floral homeotic protein AGAMOUS | ||||
TrEMBL | Q05KK3 | 1e-142 | Q05KK3_CITUN; MADS-box protein | ||||
TrEMBL | V4TQL4 | 1e-142 | V4TQL4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006449577.1 | 1e-143 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6181 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-113 | MIKC_MADS family protein |