PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_850_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 750aa    MW: 83720.1 Da    PI: 4.6426
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_850_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-12603645246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rW+++E el+++av+q+G++  + I + ++ gRt+ q+k+++ k
     Neem_850_f_1 603 VRWSKQETELFYEAVRQFGTD-LSMIQQLFP-GRTRQQIKLKYKK 645
                      69*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159636.2E-29595678No hitNo description
PROSITE profilePS5129310.027600648IPR017884SANT domain
SMARTSM007175.0E-10601649IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-8602645IPR009057Homeodomain-like
CDDcd001672.57E-8604645No hitNo description
SuperFamilySSF466896.28E-11604652IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MDLDSDLFAD ESGPVVNHVG NGLALNPWTA RGRFQPKAKP RPRKETTLHV DVTDKDNVLS  60
DPVGLSLPTS EVVGTIEQLR ENKESDHALH SDIAVSDGCG DLHSSLQKAV VQSADVFSGL  120
ECLNDFPSQP TNGTEKSAII DSDYKDGGEN VTVEGQSCNN TATFTVCDAA QPQTYPDLFM  180
TQEPISCGQA IVSNNAGGIS VDEGRLEREV PQEMAFPDLN CVDFMSKEAV ASGWRAGKYK  240
PKPKVRTENE SYSTSLPRPD AVDSIMNLPN AQFVSSETEC MAEGSIPVYP PDDVFDYSSI  300
DLGDIIPSDP TTSEFPMNEV LTNLAETHTG APSSGNVQQE DVPAMNENQS AMGRKRKAST  360
VSNLSHKSNE SSWACEEIEG GKSSRQLRKK VAVPELVDEP DDEVHKNGSF TAEPPRSTVD  420
ADEGAVDGSR MQKASRNKRE PRKSKTPVTE NEKPVRNRRK ANEASDKSNE DPPKKFSHSS  480
RRRRRTVSKE LLETPEDEID PRKVPMKDLI LLAEYKERLA SKEAKRSTTP LTNQRVREVF  540
WVGGSRERTF AENSFHEEHY HNEEDPFASE EGNDSIGDQS THRVQSNSIY FNYQSFMKKT  600
PTVRWSKQET ELFYEAVRQF GTDLSMIQQL FPGRTRQQIK LKYKKEERKY PLRLTEALTK  660
RPKDHSHFEK VIEQLQQVAA KAARETNEDD SVDLTGEDVE ELIPEPNDEA GKRKTEQDQD  720
GEADVAEVCS PLKADESDDD DIWSSYKSEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5n9g_C2e-1259368070155Transcription factor TFIIIB component B'' homolog
5n9g_H2e-1259368070155Transcription factor TFIIIB component B'' homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1480485RRRRRT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487244.10.0uncharacterized protein LOC102613204 isoform X1
TrEMBLA0A2H5QNH80.0A0A2H5QNH8_CITUN; Uncharacterized protein
TrEMBLA0A2H5QNJ80.0A0A2H5QNJ8_CITUN; Uncharacterized protein
STRINGXP_006487244.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.13e-45MYB_related family protein