PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8476_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 391aa    MW: 44647.4 Da    PI: 4.943
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8476_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.91.8e-31121348128
            NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100
                    +P+dee++   L+ k  + + ++ ++i+evdiyk+eP dLp  + ++ +e  wyfF++   ky++++  nr t++gyWk t +d+++l+k +++++
  Neem_8476_f_2  12 QPNDEEII-ALLNMKELDPDYSV-QIINEVDIYKLEPFDLPglSVIQWDELVWYFFCSPCCKYRNSQCVNRRTDEGYWKITSRDRKILAKhSTQVI 105
                    7*******.88999999999999.89***************6336666777*************************************99667779 PP

            NAM 101 glkktLvfy.kgrapkgektdWvmheyrl 128
                    g+kk L+fy +g  pk +ktdWvmhe++ 
  Neem_8476_f_2 106 GTKKYLTFYkHGYPPKEHKTDWVMHEFHS 134
                    *********557999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.8175152IPR003441NAC domain
PfamPF023654.4E-1511133IPR003441NAC domain
SuperFamilySSF1019415.23E-3712152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MTLFNAVRLQ RQPNDEEIIA LLNMKELDPD YSVQIINEVD IYKLEPFDLP GLSVIQWDEL  60
VWYFFCSPCC KYRNSQCVNR RTDEGYWKIT SRDRKILAKH STQVIGTKKY LTFYKHGYPP  120
KEHKTDWVMH EFHSEYDPSY EKDFVICRIE KKTKNKSKSS TSYDGQSSID HLASNFRDQV  180
QISGHPHMTH DFGNNFAADT VSRVEHEELA DMTSNHTNRI VDNVSGMGEP LLPRFDELCG  240
VIGLYYNSFP TQQSPVCVED VALSGHSGMD QYSFSTQQLP VSPEQGSSSH PGGFSIDCIV  300
LNSQFESRQV DLNPQWAVQD NYRFQENGHP MFPGLISSKS ASSEANFGDS SDTASQTVNT  360
WANGCSPMAA VDYYFDSVYE QRLNSAGEYY Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-211315825171NO APICAL MERISTEM PROTEIN
1ut4_B4e-211315825171NO APICAL MERISTEM PROTEIN
1ut7_A4e-211315825171NO APICAL MERISTEM PROTEIN
1ut7_B4e-211315825171NO APICAL MERISTEM PROTEIN
4dul_A4e-211315825171NAC domain-containing protein 19
4dul_B4e-211315825171NAC domain-containing protein 19
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.15e-29NAC 014