PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8447_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 224aa MW: 25580.8 Da PI: 8.9813

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8447_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.6e-10	107	165	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r+ NR +A+rsR+R++++i++L+++++ ea +aL ++++++ +++ lk+++ Neem_8447_f_2 107 KRIKRLLANRASAQRSRLRRLEYIDKLKKEIDHEEARLSALSPQISRYETQYKLLKMKN 165 99*****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.2E-9	103	167	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.232	105	168	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-11	107	163	No hit	No description
Pfam	PF00170	6.1E-9	107	165	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.64E-10	107	162	No hit	No description
CDD	cd14703	1.59E-11	108	157	No hit	No description
PROSITE pattern	PS00036	0	110	125	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MLNRTKSFST SSCINIENSG LTTSTLASSQ LRAPPHRRSA SDSIALMRDP YFINLGNAGD 60 NFSPEGNLES YNGGDQNHHF NFSIGISDQK FIYPSENNHD VRCLDPKRIK RLLANRASAQ 120 RSRLRRLEYI DKLKKEIDHE EARLSALSPQ ISRYETQYKL LKMKNYEIKE KVEALENEKA 180 AKEAEFQALM EERVAPYIGA EFQALMEERV ALQALANQMH QKGK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015386694.1	6e-48	basic leucine zipper 34-like
TrEMBL	A0A2H5MVN0	1e-46	A0A2H5MVN0_CITUN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18651	6	8