PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8368_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 345aa    MW: 39668.2 Da    PI: 4.7675
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8368_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.91.4e-5561331128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhPtdeelv +yL +k++g+++el e+i+e+d+yk+ePwdLp k  + +++ ewyfFs+rdkky++g+r+nrat++gyWkatgkd++v+s
  Neem_8368_f_2   6 LPPGFRFHPTDEELVAYYLDRKITGRTIEL-EIIPEIDLYKHEPWDLPdKsYLPGKDLEWYFFSPRDKKYPNGSRTNRATRAGYWKATGKDRPVHS 100
                    79****************************.99***************5334445677************************************** PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ vg+kktLv+y+grap+g +t+Wvmheyrl
  Neem_8368_f_2 101 -LKRSVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                    .8899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-633157IPR003441NAC domain
PROSITE profilePS5100560.5936157IPR003441NAC domain
PfamPF023658.6E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKITG RTIELEIIPE IDLYKHEPWD LPDKSYLPGK  60
DLEWYFFSPR DKKYPNGSRT NRATRAGYWK ATGKDRPVHS LKRSVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLLDSLCGT ASLSLKDSYA LCRVFKKTMQ IPKAKEDHRE TIGNNIDKET  180
VGFSDEQMLG DDTSGIESSR RREVEDENFN NDYSKFPSDT SSSDFTQATP TETGTADDYQ  240
APFISDEANS TANMYSLGVD FTSNLIQDIQ MPGYTNLQYP GPYPPLELED FPQINIAETK  300
PSKPENFDEC LMHEKYRDYM NGTLEEIYYL CSSQDNNSIA LSMQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-57115712165NO APICAL MERISTEM PROTEIN
1ut4_B4e-57115712165NO APICAL MERISTEM PROTEIN
1ut7_A4e-57115712165NO APICAL MERISTEM PROTEIN
1ut7_B4e-57115712165NO APICAL MERISTEM PROTEIN
4dul_A4e-57115712165NAC domain-containing protein 19
4dul_B4e-57115712165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422300.10.0NAC domain-containing protein 45
RefseqXP_006493742.10.0NAC domain-containing protein 45
TrEMBLA0A2H5NQR00.0A0A2H5NQR0_CITUN; Uncharacterized protein
TrEMBLV4S9K70.0V4S9K7_9ROSI; Uncharacterized protein
STRINGXP_006493742.10.0(Citrus sinensis)
STRINGXP_006422300.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81232640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-104NAC domain containing protein 20