PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8368_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 295aa MW: 32760.6 Da PI: 5.9432

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8368_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.5	1.7e-09	28	51	22	46
T-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46 ++W+ Ia++++ gRt++++k++w++ Neem_8368_f_1 28 KRWAQIAKHLP-GRTDNEVKNYWNS 51 47*******.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.253	12	57	IPR017930	Myb domain
SuperFamily	SSF46689	6.16E-9	23	61	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-7	27	51	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-12	28	57	IPR009057	Homeodomain-like
CDD	cd00167	2.55E-7	28	50	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MNRLKRSSPM SIVKEKRGKW VTGAAANKRW AQIAKHLPGR TDNEVKNYWN SCVKKKLMSQ 60 GLDPKTHNLM PSHQRASNKI ACNIIPQTYG QQQQQQPHIS SSAVFTVNSQ IPGNLSMEFG 120 PPVLTLPPPP PNPFVNDNQT PLLQPVTIPI PTSEYQNPNV LWNSSGQNSH DSVIFPHVSS 180 VDQNGPMSSS SSSSVNPSGF GLPEENCCIW GTNTIPETFE SPSFAGKQQQ LDQQEQQEKE 240 KICQTQMDEA KGCQEMDCSF DSSSFDLEFV DSTLMSGAMC RDFSSISMDD FAWNF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006422299.1	5e-89	transcription factor MYB41
Refseq	XP_006493796.1	5e-89	transcription factor MYB41
TrEMBL	A0A067F5V6	1e-87	A0A067F5V6_CITSI; Uncharacterized protein
TrEMBL	V4U8D9	1e-87	V4U8D9_9ROSI; Uncharacterized protein
STRING	XP_006493796.1	2e-88	(Citrus sinensis)
STRING	XP_006422299.1	2e-88	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	1e-24	myb domain protein 67