PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7874_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Dof
Protein Properties Length: 327aa    MW: 35581.6 Da    PI: 9.0794
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7874_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.73.4e-403191262
         zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                   +e+alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk +
  Neem_7874_f_1 31 QEQALKCPRCDSLNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKIK 91
                   5799******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-262889IPR003851Zinc finger, Dof-type
PfamPF027017.5E-343389IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4413589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MMSSDNLLAK PVSKDENQNP GNRKTASTRP QEQALKCPRC DSLNTKFCYY NNYSLTQPRH  60
FCKTCRRYWT KGGALRNVPI GGGCRKNKKI KSSSRLSADS KDSGSTSEIG GLKFFHGISP  120
AMDFQLGGLS FPRLNPPPTG ICSQFSSFGD STSPSCFSLD PSASSGNNLM GFNYPLSSVT  180
NSFSGAIQEM GSLNVNSSLA SSIESLSSIN QDLHWRLQQQ RLAMLFGREN QKDSSNVSSV  240
HLESQTQKPQ PILFQNLEIP KPEVSAVGNL RKEGASGEPA TEWFFGNSYA PVTAATPTNS  300
SSHGNDNTSN WNGVQAWGDL HRYSALP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021274371.10.0dof zinc finger protein DOF5.7-like
TrEMBLA0A061DI280.0A0A061DI28_THECC; Dof-type zinc finger DNA-binding family protein
STRINGEOX918920.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49502850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.17e-60Dof family protein