PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7758_f_10
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 550aa    MW: 61168.2 Da    PI: 7.0124
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7758_f_10genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.53.4e-122148835
            GATA  8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     TplWR+gp  ++ LCnaCG ++r kg+
  Neem_7758_f_10 21 GTPLWRNGPPEKPVLCNACGSRWRTKGT 48
                    6********88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0024262IPR000679Zinc finger, GATA-type
CDDcd002021.03E-11261No hitNo description
PfamPF003204.9E-102048IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-62052No hitNo description
Gene3DG3DSA:3.30.50.101.9E-82148IPR013088Zinc finger, NHR/GATA-type
PfamPF139193.6E-7289374IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MVCQNAECTT DPLKALSVVI GTPLWRNGPP EKPVLCNACG SRWRTKGTLA NYTPLHARAE  60
PDDYEDHRVS KVKSISINKS KDVKVLKRKS NNDNVVVGGF IPDYNQGYRK FVDEDTSNRS  120
SSGSAISNSE SCAQFGSADA SDLTGPAQPN AWDSLVPSKK RTCVNRPKPS PVEKLTKDLC  180
TILHEQQSSY FSGSSEEDLL FESETPMVSV EIGHGSVLIR HPSSIAREEE SEASSLSVEN  240
KHFSANEAYS RSVTLPVHNY NKGVNFSSRN MDKAKNSIGQ GMQQDQLKRD KSQHEKLQLL  300
GNHNSPLCDI DLNDILNFEE FVRHLTSEEQ QQLLKYVPLL DTAKFPDSLR SMFDSLQFKE  360
NLSSFQQLLG EGVFDLSFPG VTTEDCKTLK RLALSNLTTY NWVEHYHSLK RRRSGGGWSY  420
VARGPDATAS SNIVNAKRSR DVQYQKFPEA KNMMKSPKRV TVKATYENKE FVENDGSCFS  480
PRSLFALPTD GSSLMLESLN FVAESSDQDL LLDVPSNGSF PQAELLHPSL SYGQQASNSS  540
SSAYPRHVRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440183.10.0GATA transcription factor 26
SwissprotQ8W4H11e-152GAT26_ARATH; GATA transcription factor 26
TrEMBLV4SZX20.0V4SZX2_9ROSI; Uncharacterized protein
STRINGXP_006440183.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-142GATA transcription factor 26