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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7743_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C2H2 | ||||||||
Protein Properties | Length: 544aa MW: 61934.4 Da PI: 4.8927 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00046 | 255 | 276 | 1 | 22 |
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 + C Cgk F++ + k+H ++ Neem_7743_f_2 255 FYCVVCGKKFKSEKQWKNHEQS 276 78*****************876 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.00053 | 515 | 533 | 2 | 20 |
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C++Cg+ F ++ L++H+ Neem_7743_f_2 515 VCEKCGEEFESRNKLHKHL 533 6*****************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46565 | 1.05E-22 | 3 | 84 | IPR001623 | DnaJ domain |
Gene3D | G3DSA:1.10.287.110 | 6.9E-23 | 3 | 78 | IPR001623 | DnaJ domain |
SMART | SM00271 | 7.4E-21 | 6 | 68 | IPR001623 | DnaJ domain |
CDD | cd06257 | 4.91E-16 | 7 | 65 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 19.216 | 7 | 76 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 3.3E-20 | 8 | 73 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.4E-14 | 9 | 27 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.4E-14 | 27 | 42 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.4E-14 | 48 | 68 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 53 | 72 | IPR018253 | DnaJ domain, conserved site |
SuperFamily | SSF57667 | 3.69E-14 | 251 | 297 | No hit | No description |
SMART | SM00451 | 2.2E-5 | 252 | 286 | IPR003604 | Zinc finger, U1-type |
PROSITE profile | PS50157 | 9.162 | 255 | 284 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 255 | 279 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 1.2E-10 | 255 | 280 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 257 | 279 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.2 | 514 | 538 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 514 | 543 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 516 | 538 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MASEKRCLYE VLGLNKDCNP DEIRSAYKKL ALQRHPDKLV QSGLSQAEAT AQFQELVHAY 60 EVLSDPKERA WYDSHRSQIL FSDLNSAYNS VPNSVVPNLY SYFSNTAFSG YSDTGKGFYK 120 VYTDLFNKIY SAEINYVKKL GLGLDMVREA PIMGNLESPY GQVTAFYNYW LGFCTVMDFC 180 WVDQYDVMAG PNRKSRRVME DENKKLRNKA KREYNETKAS KYEEPEWARI DDEGDHDNGI 240 EGELEEENEM KRNEFYCVVC GKKFKSEKQW KNHEQSKKHK EKVAELRESF ADEDEVMETF 300 EELDVEVEEL GERFKEGLGV EEGESKNEAG GLSGEPSDED AENELFDVEV NGVNDEDEDN 360 EMSVLEAMVS EHKIRKNVAL RQEDEVSKPE VHLQNKIDEG EFMGYDNCRG PRRKNKKERG 420 KKSAGEATKG DRDGFKSKNE EANGHDNSSF MEQSSSHAFV ETGNSGTIDD LSDKDVKIPD 480 PPVDGKGTAK DRKPKLKYSS KGKKAKAASK NPSNVCEKCG EEFESRNKLH KHLGDTGHAS 540 LKFR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT135373 | 1e-32 | BT135373.1 Lotus japonicus clone JCVI-FLLj-21E2 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006477664.1 | 0.0 | DNAJ protein JJJ1 homolog isoform X1 | ||||
Swissprot | Q9C911 | 1e-165 | JJJ1_ARATH; DNAJ protein JJJ1 homolog | ||||
TrEMBL | A0A067FQM8 | 0.0 | A0A067FQM8_CITSI; Uncharacterized protein | ||||
STRING | XP_006477664.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8869 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74250.1 | 1e-149 | DNAJ heat shock N-terminal domain-containing protein |