PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7586_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 350aa    MW: 39051.8 Da    PI: 5.5013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7586_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.8e-10135178755
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    + Er+RR r+++++  Lr l+P+      +K++Ka+i   Av Y++  q
  Neem_7586_f_1 135 ISERKRRGRMKEKLYALRALVPNV-----TKMDKASIIGDAVSYVQGQQ 178
                    78*********************8.....8**************99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-15126193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.78128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-10130178No hitNo description
Gene3DG3DSA:4.10.280.103.2E-15130195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-12134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-7134177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDAFGNLLVR NNDSEVLDFI DHPNFDQFVD RFRGENEDTL LPNFDCRMIS GCCDDNQFGS  60
ESTPDDDTFG FNGPSTTMSD LSFVLNSSFS SLNENVNGVD GERDNDGDHC SGTTRTTKTT  120
KNNRQSKADR SKTLISERKR RGRMKEKLYA LRALVPNVTK MDKASIIGDA VSYVQGQQMK  180
AKKLKAEIAG LEASLTGSQN NQQSIENTRK TQVRSNNQSI YKKILLQVHP DNNTIYMQIK  240
MDIVQVEERG FYLKLVCNKG EGVAVSLYKA LESLTSFDVR NTTLATESER IALAFTLKAR  300
ESEQAVHLPN LKLWVTGALM DQEFEILTTL SALASTSFES VAIHACYSTV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424445.11e-117transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLV4SFV81e-116V4SFV8_9ROSI; Uncharacterized protein
STRINGXP_006424445.11e-117(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41872857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.12e-81FER-like regulator of iron uptake