PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7539_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 388aa MW: 43164.4 Da PI: 9.2462

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7539_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	148	171	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F +++L++H+ H Neem_7539_f_3 148 FPCTACGEIFQKPHLLEQHQAIkH 171 89******************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.598	148	176	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	150	171	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	7.58E-15	173	387	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.8E-4	184	290	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
Gene3D	G3DSA:3.90.228.10	1.8E-6	320	387	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MATSSNIGSF FNKFFSLFLI LLLHLGCFMF ISNNRAPTRK KRKPSPLSPT SSLSPSRGQP 60 HKRLASSWSY VKRIFSSSKT CKNSTQTRPS TPTLTSARSS QHSLVSMVPP DQTQISEIPP 120 RVKQPNSCPE SDISADHNPF FPLRNDIFPC TACGEIFQKP HLLEQHQAIK HAVSELVDGD 180 SGKNIVNIIF KTGWSNKDKN PKIHRILKIH NSPKILSRFE EYREIVKAKA ARNGAARKRD 240 ERCIADGNEL LRFYCSTFLC DLGLNGNSSI CNQQYCSVCG IVKSGFSPKL DGISTLSSSW 300 RAHVSIPEDI EEEFKFMNVK RAMLVCRVIA GRVGCDADHD VEISKEDGGF DSVVGRGASG 360 VHTRIDDEEL LVFNPRAVLP CFVIVYTA

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MATSSNIGSF FNKFFSLFLI LLLHLGCFMF ISNNRAPTRK KRKPSPLSPT SSLSPSRGQP  60
HKRLASSWSY VKRIFSSSKT CKNSTQTRPS TPTLTSARSS QHSLVSMVPP DQTQISEIPP  120
RVKQPNSCPE SDISADHNPF FPLRNDIFPC TACGEIFQKP HLLEQHQAIK HAVSELVDGD  180
SGKNIVNIIF KTGWSNKDKN PKIHRILKIH NSPKILSRFE EYREIVKAKA ARNGAARKRD  240
ERCIADGNEL LRFYCSTFLC DLGLNGNSSI CNQQYCSVCG IVKSGFSPKL DGISTLSSSW  300
RAHVSIPEDI EEEFKFMNVK RAMLVCRVIA GRVGCDADHD VEISKEDGGF DSVVGRGASG  360
VHTRIDDEEL LVFNPRAVLP CFVIVYTA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002299819.2	0.0	uncharacterized protein LOC7478541
TrEMBL	B9GIT8	0.0	B9GIT8_POPTR; C2H2 family protein
STRING	POPTR_0001s25700.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7919	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-119	C2H2 family protein