PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7517_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 944aa MW: 106173 Da PI: 7.0651

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7517_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29	2.7e-09	180	242	18	81
trihelix 18 eerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 ++ r+k ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y Neem_7517_f_2 180 AAQSTRAKTRADKDREVAEFLQRHGINRDAKTAGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 242 55667888999999**************************************9965555.3445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	4.31E-15	776	933	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	3.0E-5	797	892	No hit	No description
CDD	cd00180	2.75E-13	805	929	No hit	No description
Gene3D	G3DSA:1.10.510.10	7.8E-4	899	935	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 944 aa Download sequence Send to blast
MQSPAVVVTG APFISAPVYV PIGATSSPYE QQFESANPKR QRYNSSQWKL LPSPPQQQQQ 60 KQTQIAILTS ESSPPPTTNP TNPQSQAHTT AASSSDTTSS PTHSPIPSLS AASGQETNKP 120 EGEQFHPQFR KGKYVSPVWK PNEMLWLARA WRIQYQGGSN GSSTRIDQLE TGQATGSDIA 180 AQSTRAKTRA DKDREVAEFL QRHGINRDAK TAGTKWDNML GEFRKVYEWE RGGEREQVGK 240 SYFRLSPYER KLHRLPASFD EEVFEELSQF MGSRMRTSQS RGASVIVTGD DIRTLHASTR 300 ALPPPPPFKE DDFSVSARAK QLVMTSGGEA FFHGGRGSLL GFESSLDVGV PLSSSSSKEL 360 RRIGKIRMTW EESVSLWAEE GEHHRGRIRL QGSSFLNADE LTFFDDAMVA CNMEAFEDGN 420 LIGFSVDRFA PGQQVKVFGR RKSSSSSAPS GFIERVQFPF SEPSIRSIPP WEYQDPTDYY 480 VGCLRVPPTT LPSLFELSWH LQEPPPEELR FPLRKDVYRD LPQGKELFFT TSTELLDCRA 540 ITYDILSPII RNNPSLSFST ATSRDSFIGL WDDCINRVVS KFCSVEMDIV RKPSSLSPEP 600 LQDQWPNVTG FVRNLCLWRG EETDQLKEGQ LDPSSSIVEK FLWTYMDLPY LFGYYAVGYI 660 VTFCALSRSQ DRVVRTDLYS LDLSSPVERL KALIPCYRIA GLLPLLADRC FSSFNNGGSY 720 KQYPFSDFER IDLGNGNIIE MTPNTVTRFF SSKRKWAAVK EIYDFLDHRI PHAESIYQSS 780 EKDLALVFKP RGCKFKPANC EHLVEALKYV TKALVALHDL SFMHRDLSWD KVMRSSDREN 840 EWIVCGFDEA VGAPQIYPHG VVGLEARGKH APEMGRGLHG VKVDVWGVGH LVKTCGLTNV 900 PKMLRELQNR CLDQNPEQRP TAADCYHHLL QLQSSLSATS TAPY

Sequence ? help Back to Top

Protein Sequence Length: 944 aa Download sequence Send to blast

MQSPAVVVTG APFISAPVYV PIGATSSPYE QQFESANPKR QRYNSSQWKL LPSPPQQQQQ  60
KQTQIAILTS ESSPPPTTNP TNPQSQAHTT AASSSDTTSS PTHSPIPSLS AASGQETNKP  120
EGEQFHPQFR KGKYVSPVWK PNEMLWLARA WRIQYQGGSN GSSTRIDQLE TGQATGSDIA  180
AQSTRAKTRA DKDREVAEFL QRHGINRDAK TAGTKWDNML GEFRKVYEWE RGGEREQVGK  240
SYFRLSPYER KLHRLPASFD EEVFEELSQF MGSRMRTSQS RGASVIVTGD DIRTLHASTR  300
ALPPPPPFKE DDFSVSARAK QLVMTSGGEA FFHGGRGSLL GFESSLDVGV PLSSSSSKEL  360
RRIGKIRMTW EESVSLWAEE GEHHRGRIRL QGSSFLNADE LTFFDDAMVA CNMEAFEDGN  420
LIGFSVDRFA PGQQVKVFGR RKSSSSSAPS GFIERVQFPF SEPSIRSIPP WEYQDPTDYY  480
VGCLRVPPTT LPSLFELSWH LQEPPPEELR FPLRKDVYRD LPQGKELFFT TSTELLDCRA  540
ITYDILSPII RNNPSLSFST ATSRDSFIGL WDDCINRVVS KFCSVEMDIV RKPSSLSPEP  600
LQDQWPNVTG FVRNLCLWRG EETDQLKEGQ LDPSSSIVEK FLWTYMDLPY LFGYYAVGYI  660
VTFCALSRSQ DRVVRTDLYS LDLSSPVERL KALIPCYRIA GLLPLLADRC FSSFNNGGSY  720
KQYPFSDFER IDLGNGNIIE MTPNTVTRFF SSKRKWAAVK EIYDFLDHRI PHAESIYQSS  780
EKDLALVFKP RGCKFKPANC EHLVEALKYV TKALVALHDL SFMHRDLSWD KVMRSSDREN  840
EWIVCGFDEA VGAPQIYPHG VVGLEARGKH APEMGRGLHG VKVDVWGVGH LVKTCGLTNV  900
PKMLRELQNR CLDQNPEQRP TAADCYHHLL QLQSSLSATS TAPY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ453914	1e-128	DQ453914.1 Toona ciliata var. pubescens clone TC12 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007038523.2	0.0	PREDICTED: uncharacterized protein LOC18605455 isoform X1
TrEMBL	A0A061G7K8	0.0	A0A061G7K8_THECC; Kinase superfamily protein isoform 1
STRING	EOY23024	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-07	Trihelix family protein