![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_7456_f_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 343aa MW: 38361.9 Da PI: 5.544 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 66.8 | 3.6e-21 | 150 | 200 | 3 | 54 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 r++WtpeLH +F a++ L G +kA Pk il++mk + Lt+ +v+SHLQkY+ Neem_7456_f_6 150 RIVWTPELHLKFTAAISAL-GDKKARPKLILQMMKEPHLTIRQVASHLQKYK 200 99*****************.9******************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 11.465 | 1 | 39 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 4.4E-6 | 1 | 64 | No hit | No description |
SuperFamily | SSF46689 | 3.23E-14 | 147 | 205 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 148 | 206 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.1E-18 | 149 | 200 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.2E-7 | 152 | 200 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 343 aa Download sequence Send to blast |
MSSVRNRNVA GKALAEGACY FLEKPISFDD LKYIWQHVYK KKSRNPLKES RKSELVHHGK 60 TFQEENIRVN IPNENNNQIM EANQAFTADE ISIKESRNNQ STQQLTANEG KRSLEEGGGG 120 EAKEEKRIKL DSEDDETDEN ENFGVKRPRR IVWTPELHLK FTAAISALGD KKARPKLILQ 180 MMKEPHLTIR QVASHLQKYK GQVKRISDNG TIDLPSTLKP SRATCTTGSL PTIKSYEFTV 240 AGTSGSSTNV LNAGKSPIEY FSEGNQEMNV IEVPKPPAGS VLPASSVNQN YEPSSEYADL 300 LKLLDEDEDE EYKSVLGAGL NPCDLDRYCG WLTEALQEDS QLP |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015382697.1 | 7e-83 | putative two-component response regulator-like APRR6 | ||||
TrEMBL | A0A2H5P5N2 | 3e-77 | A0A2H5P5N2_CITUN; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20051 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68210.1 | 8e-23 | pseudo-response regulator 6 |