PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7370_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | CPP | ||||||||
Protein Properties | Length: 650aa MW: 71019.6 Da PI: 8.4328 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46 | 1e-14 | 159 | 198 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnC++s+Clk+YCeCfaag +C+ C+C +C+N+ e+ Neem_7370_f_3 159 KQKQCNCRNSRCLKLYCECFAAGIYCDG-CNCINCHNNVEH 198 89**************************.********9876 PP | |||||||
2 | TCR | 50.5 | 4.1e-16 | 260 | 299 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Neem_7370_f_3 260 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNFE 299 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 7.4E-19 | 158 | 198 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.733 | 159 | 300 | IPR005172 | CRC domain |
Pfam | PF03638 | 9.4E-12 | 160 | 195 | IPR005172 | CRC domain |
SMART | SM01114 | 1.5E-19 | 260 | 301 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-12 | 263 | 298 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 650 aa Download sequence Send to blast |
MEQGETISDF APKKLARQLD FTMCRASANG TLPEQSVNSQ SQQSQTQSHS VLQAQPKSQQ 60 QVQSQAASQS QSQSQPLVPS QLLPPSQQQS SHPQVQSQMK SPLQAMPQRQ ARPQQMRMVQ 120 RVPHPVHKLP LPTLHAVKQE SPRSRPWGSI EAKDGTPKKQ KQCNCRNSRC LKLYCECFAA 180 GIYCDGCNCI NCHNNVEHEA ARQEAVGATL ERNPNAFRPK IASSPHGSQD ARKQSIFSPD 240 PCPHPSTQKE DAREAQLAAK HNKGCHCKKS GCLKKYCECF QANILCSENC KCLDCKNFEG 300 SEERRALFHG DHNAIAFMQK AANAAINGAV GSSGYGTPLA SNKRKSEELS FGVTAKDHLI 360 NRNAQSQQGN HLRNCAVPSS QSFPVSWTAN AAVLGSSKSA LRSPLADILQ PQDMKELCSF 420 LVIVSSEATK TLTEKAGKTD RQKSTTVASS IQDSEDGKKG NAVHNGVPDD RLSGNQMDVD 480 RTSGSGSDAG DLLNERPLSP GTRALMCDEE DTVFMSAGPP TGLANHCKNT NQKSNGYEST 540 RFYAEQERLI LTRFRDFLNR LITCGSIKET MCSPLVKSET RTQQKPVEDG TIRAGTEARR 600 YKELYDDACP RSAVPMTVES SQTVSTVTAT HNNDLPMKIG LPIGNGFDGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 6e-31 | 151 | 309 | 2 | 132 | Protein lin-54 homolog |
5fd3_B | 6e-31 | 151 | 309 | 2 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006476073.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
Swissprot | Q9SZD1 | 1e-144 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A067GJ65 | 0.0 | A0A067GJ65_CITSI; Uncharacterized protein | ||||
STRING | XP_006476073.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1783 | 28 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-145 | Tesmin/TSO1-like CXC domain-containing protein |