PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7365_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 352aa MW: 40273 Da PI: 9.1746

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7365_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.5	4.2e-07	137	193	3	32
HHHHHHHHHHHHHHHHHHHHHHCTSCCC............................. CS HLH 3 rahnerErrRRdriNsafeeLrellPkas...........................k 32 ++h Er RR+++++ f++L llP+++ Neem_7365_f_3 137 EMHILTERERRKKMRNMFSNLHALLPQLPpklcatwenlvlylrfhapfylqrhlqF 193 57999**********************543666666666666666666666666651 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.2E-5	137	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.59E-5	137	167	No hit	No description
Pfam	PF00010	1.5E-4	137	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.47E-6	137	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	3.34E-6	275	314	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MNPFLFGSQI TALSHDCILF PFLYQNHISL LPLPYTFATL FRSKKRTISL HCNYNSLYKT 60 TFADHLHKCL EKDNLWVNSS FEVSGGSKEI RVDMKHPDNS SSHSPTAEIE LDAEAQIGQK 120 RSRNGKTAGG GGEPEHEMHI LTERERRKKM RNMFSNLHAL LPQLPPKLCA TWENLVLYLR 180 FHAPFYLQRH LQFEDKQKRE KLQGATFVDY EQSIITRQVQ ATDSREAFLA DEGPSPKNLS 240 MAANISHSFQ VPPSATFQTW FSPNVVVNMC GDDAQISVCS PRKPGLLTTI FYTLEKHNLD 300 VVSAHISSDR YRSMYMIHAR IRGIGERIFQ ACICMNGRTY TIKTLQKNSR SQ

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MNPFLFGSQI TALSHDCILF PFLYQNHISL LPLPYTFATL FRSKKRTISL HCNYNSLYKT  60
TFADHLHKCL EKDNLWVNSS FEVSGGSKEI RVDMKHPDNS SSHSPTAEIE LDAEAQIGQK  120
RSRNGKTAGG GGEPEHEMHI LTERERRKKM RNMFSNLHAL LPQLPPKLCA TWENLVLYLR  180
FHAPFYLQRH LQFEDKQKRE KLQGATFVDY EQSIITRQVQ ATDSREAFLA DEGPSPKNLS  240
MAANISHSFQ VPPSATFQTW FSPNVVVNMC GDDAQISVCS PRKPGLLTTI FYTLEKHNLD  300
VVSAHISSDR YRSMYMIHAR IRGIGERIFQ ACICMNGRTY TIKTLQKNSR SQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015384271.1	1e-102	transcription factor bHLH95-like
TrEMBL	A0A067GWX6	1e-108	A0A067GWX6_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006434734.1	1e-95	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5074	25	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	1e-36	bHLH family protein