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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7295_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ARF | ||||||||
Protein Properties | Length: 792aa MW: 89203.1 Da PI: 6.3261 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76 | 4.3e-24 | 140 | 241 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++ +++aee+ + k++ +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++ Neem_7295_f_1 140 FCKTLTASDTSTHGGFSVLRRHAEEClpaldmS-KQPPTQELVTKDLHGNEWRFRHIFRGQPRRHLLQSGWSLFVSSKKLVAGDAFIFL--RGETG 232 99*****************************63.4444569************************************************..44999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 el+v+v+r+ Neem_7295_f_1 233 ELRVGVRRA 241 9*****996 PP | |||||||
2 | Auxin_resp | 120.1 | 1.7e-39 | 266 | 348 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+s++eF+v+++k+++++k+ +++GmRfkm+fe+e+++e+r++Gtv+gv+d+dp++Wp+S+Wr+Lk Neem_7295_f_1 266 AWHAVATGTMFSVYYKPRTSPAEFMVPYDKYMESIKNDYTIGMRFKMRFEGEEAPEQRYWGTVIGVEDVDPMKWPGSRWRCLK 348 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-38 | 133 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-40 | 133 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.18E-20 | 139 | 240 | No hit | No description |
Pfam | PF02362 | 4.8E-22 | 140 | 241 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.899 | 140 | 242 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-21 | 140 | 242 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-35 | 266 | 348 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 9.81E-13 | 667 | 746 | No hit | No description |
PROSITE profile | PS51745 | 27.63 | 669 | 762 | IPR000270 | PB1 domain |
Pfam | PF02309 | 3.4E-7 | 715 | 760 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MAAETSGEMF LGQSVCRSET TASMEKVDSS GDALYKELWH ACAGPLVTVP RQGDVVFYFP 60 QGHIEQVQAS MNQASDQQMP AYDLPDKILC RVVNVQLKAE PDTDEVFAQM TLLPLSKEDE 120 KSVEKKAAGP LPPRPRVYSF CKTLTASDTS THGGFSVLRR HAEECLPALD MSKQPPTQEL 180 VTKDLHGNEW RFRHIFRGQP RRHLLQSGWS LFVSSKKLVA GDAFIFLRGE TGELRVGVRR 240 AMRQPTTISS SVISSHSMHI GVLATAWHAV ATGTMFSVYY KPRTSPAEFM VPYDKYMESI 300 KNDYTIGMRF KMRFEGEEAP EQRYWGTVIG VEDVDPMKWP GSRWRCLKVR WDETSPHHRP 360 DKVSPWEIEH SVAPAVDALP VCRLKRPRPN MVASTISSIP PKEGSSKVTV DHSPDFESSR 420 VLRGVCSGNN DLDSVKSPAA RMPSQGPWSS DESCKFSRTF LEQNPDYADQ VKECDSHQES 480 MFKFFPQSMM HLRNPFNMVE SGMELHRAED KEMLCKNSVN NRFGTLRGYD RLHSLEFEKQ 540 PGKLLDLFSP SDAEKSSHPM AADEQILPEK QEELMKSKGE NGCKIFGISL MSNPVATEPT 600 MQHTCPLHES WEQINLASEH MQHPSSNILF EQLKSAETAI GGDEQGKPFQ PSDQLSRDAT 660 GKHLGGSSRS CVKVHKQDIA VGRSVDLSKF TGYDELIAEL DRMFEFNGEL ITPNKKWLIV 720 FTDDEGDMML VGDDPWLEFC SMVRRIYVYT REEIKQMAPR PLNPKLEENS VADKKNGPTD 780 DKCSSHPPVL SP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-165 | 32 | 369 | 17 | 353 | Auxin response factor 1 |
4ldw_A | 1e-165 | 32 | 369 | 17 | 353 | Auxin response factor 1 |
4ldw_B | 1e-165 | 32 | 369 | 17 | 353 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 384 | 388 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002268849.1 | 0.0 | PREDICTED: auxin response factor 2 | ||||
Refseq | XP_010656858.1 | 0.0 | PREDICTED: auxin response factor 2 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | F6HWQ3 | 0.0 | F6HWQ3_VITVI; Auxin response factor | ||||
STRING | VIT_01s0244g00150.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5348 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |