PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7251_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 456aa MW: 52162.2 Da PI: 6.7997

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7251_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.9	1.5e-24	65	161	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+++v++Li a+ +++++ +++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++e+ +k+ ++ ++++ +++d + Neem_7251_f_1 65 KWTDNMVKLLILAVLYIGDEAGSEGndkkktgallQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNEILGKGtACLVVENQSLLDTM 160 7************99888775322566788899******************************************55*******9999 PP trihelix 86 e 86 + Neem_7251_f_1 161 D 161 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.5E-21	63	186	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MVAAYSHQHD TQAHQSVKQH GYLFTPKPKQ QLSPLSDEDE LGLTPDDSAG DGKRKTSPSP 60 WQRMKWTDNM VKLLILAVLY IGDEAGSEGN DKKKTGALLQ KKGKWKSVSR AMMERGFYVS 120 PQQCEDKFND LNKRYKRVNE ILGKGTACLV VENQSLLDTM DLSPKMKEEV KKLLNSKHLF 180 FREMCAYHNT CGHGGSTSGA TGTNPSPEVA TEPSQAQHQQ VQQRCLHSSE NAQHGANLIR 240 AETEGSKVVK VGSEEEYDVE DESDDEDDYD DEDEAVGNSR GQHNGHGQED EDENEEKMSR 300 KRPRNGRFLV PVSPEDENEE KMSRKRPRNG RCLVPVSPLM QQLSSEVANV MQDGGKNGWE 360 KKQWMKMKLL QLEEQQVSYQ HQAFELEKQR LKWVKFSSKK EREMERAKLE NERKRLENQR 420 MVLVVRQKEL ELLDHHNHHQ QQHSSTKRSD PSSITG

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MVAAYSHQHD TQAHQSVKQH GYLFTPKPKQ QLSPLSDEDE LGLTPDDSAG DGKRKTSPSP  60
WQRMKWTDNM VKLLILAVLY IGDEAGSEGN DKKKTGALLQ KKGKWKSVSR AMMERGFYVS  120
PQQCEDKFND LNKRYKRVNE ILGKGTACLV VENQSLLDTM DLSPKMKEEV KKLLNSKHLF  180
FREMCAYHNT CGHGGSTSGA TGTNPSPEVA TEPSQAQHQQ VQQRCLHSSE NAQHGANLIR  240
AETEGSKVVK VGSEEEYDVE DESDDEDDYD DEDEAVGNSR GQHNGHGQED EDENEEKMSR  300
KRPRNGRFLV PVSPEDENEE KMSRKRPRNG RCLVPVSPLM QQLSSEVANV MQDGGKNGWE  360
KKQWMKMKLL QLEEQQVSYQ HQAFELEKQR LKWVKFSSKK EREMERAKLE NERKRLENQR  420
MVLVVRQKEL ELLDHHNHHQ QQHSSTKRSD PSSITG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024038475.1	0.0	uncharacterized protein LOC18038704 isoform X2
TrEMBL	A0A067F4E6	0.0	A0A067F4E6_CITSI; Uncharacterized protein
STRING	XP_006481921.1	0.0	(Citrus sinensis)
STRING	XP_006430334.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6762	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	1e-67	sequence-specific DNA binding transcription factors