PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7222_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TALE
Protein Properties Length: 550aa    MW: 62946.3 Da    PI: 9.1419
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7222_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.41.5e-103253602154
                    H..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  21 k..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    +  ++yp+ ++++ LA+k+gL+++qV++WF N R +
  Neem_7222_f_3 325 NflHPYPTDSDKQMLAQKTGLSKNQVSNWFINARVR 360
                    44489*****************************87 PP
2BELL72.76e-242132661972
           BELL  19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    V+++Yk y++q+q vi sFe+vaglg+a+p+ s+A kaiS+hF cLk+ai +qi
  Neem_7222_f_3 213 VYRKYKVYYQQMQSVITSFETVAGLGHAAPHLSFAFKAISKHFCCLKNAILDQI 266
                    99**************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.8E-25130264IPR006563POX domain
PfamPF075266.3E-29135262IPR006563POX domain
PROSITE profilePS5007113.005301364IPR001356Homeobox domain
SMARTSM003895.0E-12304368IPR001356Homeobox domain
CDDcd000861.55E-12304365No hitNo description
SuperFamilySSF466893.55E-17305371IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-26307368IPR009057Homeodomain-like
PfamPF059201.6E-18321360IPR008422Homeobox KN domain
PROSITE patternPS000270339362IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MAENPEPRHL PQQNRRNKLR VTTDQTNQEQ TSSYMFHTTL PSLFQLNSST IWPSSSSSLQ  60
ILYPSSVQDV RDHVNYQQPF YSHQRLSLSL PCHHFPLNLN AQQYNVVSVS GDSLKQKGEV  120
RNSVPLGPFT GYASILMRSR FLKPAQQILD EFCGTVYFDP SRSQVDSFSE TPIRDFVSFS  180
DRIERSWKNS NLVLMLEEKS VSRGKISDCP LPVYRKYKVY YQQMQSVITS FETVAGLGHA  240
APHLSFAFKA ISKHFCCLKN AILDQIHDSG KTVSNNIAGK DTAEQAFYSQ KPVQKLGFLR  300
PPHWRSQRAL PDHAVGLLKR WLYENFLHPY PTDSDKQMLA QKTGLSKNQV SNWFINARVR  360
LWRPMVEEIH MLEVGQTRAP AAAVYPDINM PSDHQNTISA EKLPQTQQLY ILTLTCHQIT  420
KTQSLQRNFP KPQKGNKLNH IGVGGNNDVS LALALNQNNG NELSRPFTVS VPRHFDLEME  480
AEVDMETGPE YNLHQASLYQ PNGDKGFNCG VNFLEMREFC TWNRYFSTFH RISVIVVVPQ  540
LLYYRYSSMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-13310368563Homeobox protein Meis2
3k2a_B2e-13310368563Homeobox protein Meis2
4xrm_A2e-13306368163Homeobox protein Meis2
4xrm_B2e-13306368163Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042204.10.0BEL1-like homeodomain protein 9
TrEMBLA0A2H5PIU41e-165A0A2H5PIU4_CITUN; Uncharacterized protein
TrEMBLA0A2H5PIW41e-165A0A2H5PIW4_CITUN; Uncharacterized protein
STRINGXP_006486540.11e-176(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1761579
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.17e-69TALE family protein