PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_6700_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 579aa MW: 63672.7 Da PI: 4.24

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6700_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.9e-05	88	111	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+++F k+ + +H+ + H Neem_6700_f_3 88 FECHKCDMTFDEKDAYLQHLLSfH 111 89******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.58	88	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.088	88	111	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	90	111	IPR007087	Zinc finger, C2H2
SMART	SM00355	64	135	155	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MSGCPGGQHF VSCKEVSGYL QSYFGLHEAH LATDNAGDNI FDEYRAASES LVGITQKEND 60 QRQYNEQGKE VRLLGIDNLA EVQIRDLFEC HKCDMTFDEK DAYLQHLLSF HQRTTRRYRL 120 GSSVGDGVII KDGKFECQFC HKVFHERRRY NGHVEPPGRS RLQNKNESPT RAEFPARAEF 180 PTRDELPTRD EFPARISKMD ALIEIAQNSI LETSSARSNV EPDGGSGTDK LNQVSNPELP 240 ASASDHELTS DSALSEPEVD DDMINANLDQ ESYQQNNDYK VTNEKMETID DASNLMDVKI 300 DSCVDPAAVL PTDEQNGYSS ETSGEKGGLA FIADEIDKSG IELEGGCEIH SHGQLINQKA 360 CPLETNVNLG CSNAVEHGEP DEMNDISIKL EDDFGCNNVG FANDEIPVTV AQNLEENLPN 420 HGVSKLSMSM LEPSRGFPAP NALPIQEEDD DGPRAEQRHS SSATGFEELK FDKIEQNLKY 480 GFESGQAKEP ISQPEVPNNA GISEGSYGSS SAQLQSSEAV MLSRDGDDNL TNCVWCGMEF 540 RHEEGVDSEI QQMQSDSVGY MCPTCKAKIS GPLTVLGGG

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MSGCPGGQHF VSCKEVSGYL QSYFGLHEAH LATDNAGDNI FDEYRAASES LVGITQKEND  60
QRQYNEQGKE VRLLGIDNLA EVQIRDLFEC HKCDMTFDEK DAYLQHLLSF HQRTTRRYRL  120
GSSVGDGVII KDGKFECQFC HKVFHERRRY NGHVEPPGRS RLQNKNESPT RAEFPARAEF  180
PTRDELPTRD EFPARISKMD ALIEIAQNSI LETSSARSNV EPDGGSGTDK LNQVSNPELP  240
ASASDHELTS DSALSEPEVD DDMINANLDQ ESYQQNNDYK VTNEKMETID DASNLMDVKI  300
DSCVDPAAVL PTDEQNGYSS ETSGEKGGLA FIADEIDKSG IELEGGCEIH SHGQLINQKA  360
CPLETNVNLG CSNAVEHGEP DEMNDISIKL EDDFGCNNVG FANDEIPVTV AQNLEENLPN  420
HGVSKLSMSM LEPSRGFPAP NALPIQEEDD DGPRAEQRHS SSATGFEELK FDKIEQNLKY  480
GFESGQAKEP ISQPEVPNNA GISEGSYGSS SAQLQSSEAV MLSRDGDDNL TNCVWCGMEF  540
RHEEGVDSEI QQMQSDSVGY MCPTCKAKIS GPLTVLGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006492635.1	0.0	uncharacterized protein LOC102626569 isoform X1
TrEMBL	A0A2H5PST3	0.0	A0A2H5PST3_CITUN; Uncharacterized protein
STRING	XP_006492635.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15407	2	3