PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6617_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

WRKY

Protein Properties

Length: 430aa MW: 47777.6 Da PI: 7.4981

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6617_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96	2.6e-30	298	356	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrC+ a gCpv+k+v+r+aed++++++tYeg+Hnh+ Neem_6617_f_1 298 SDGCQWRKYGQKTAKGNPCPRAYYRCSLAtGCPVRKQVQRCAEDKTILITTYEGNHNHP 356 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-32	282	358	IPR003657	WRKY domain
PROSITE profile	PS50811	29.551	292	358	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-27	294	358	IPR003657	WRKY domain
SMART	SM00774	7.8E-36	297	357	IPR003657	WRKY domain
Pfam	PF03106	8.2E-27	299	356	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MSISTTGDDE CAARQNTSMI TDSSNYDRLT TIKELDFFAM HSNDNDHPAK IDDQLQTSHI 60 CPSPSDELFT NFTVGEKLLT LSTATARPLK NEDRNDPNLT QLVGEKLLTL STATARPLKN 120 EDRNDPNLTQ LLRKLQVEVE KSKEENKILR STLDLIKTKY KALQSQLLSA MHRPVASKSC 180 GDQLQDERNG GGDVPALSTI RFLDHDQVPL AEEMGISDHR PWQYSEKKTA DRLMSSPTID 240 VDAMRRDCQS ITNQVGKKRI SRDDDDANYT TKNYEQELLP YRKARVSIRA RSVAPMLSDG 300 CQWRKYGQKT AKGNPCPRAY YRCSLATGCP VRKQVQRCAE DKTILITTYE GNHNHPLPPA 360 ATAMAVITSA AANMLVSDSI LSNSGIISAL PNYHASTFAT LSTSTPHPTI TLDLTPTNNP 420 ASTRFNNANF

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MSISTTGDDE CAARQNTSMI TDSSNYDRLT TIKELDFFAM HSNDNDHPAK IDDQLQTSHI  60
CPSPSDELFT NFTVGEKLLT LSTATARPLK NEDRNDPNLT QLVGEKLLTL STATARPLKN  120
EDRNDPNLTQ LLRKLQVEVE KSKEENKILR STLDLIKTKY KALQSQLLSA MHRPVASKSC  180
GDQLQDERNG GGDVPALSTI RFLDHDQVPL AEEMGISDHR PWQYSEKKTA DRLMSSPTID  240
VDAMRRDCQS ITNQVGKKRI SRDDDDANYT TKNYEQELLP YRKARVSIRA RSVAPMLSDG  300
CQWRKYGQKT AKGNPCPRAY YRCSLATGCP VRKQVQRCAE DKTILITTYE GNHNHPLPPA  360
ATAMAVITSA AANMLVSDSI LSNSGIISAL PNYHASTFAT LSTSTPHPTI TLDLTPTNNP  420
ASTRFNNANF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-23	284	360	1	76	WRKY transcription factor 1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7156	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	7e-65	WRKY family protein