PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6557_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 272aa    MW: 30065.3 Da    PI: 6.641
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6557_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.39e-11155202455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Neem_6557_f_3 155 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 202
                    8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-18149220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-10149206No hitNo description
Gene3DG3DSA:4.10.280.102.3E-18151219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-8155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-11157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDPPAMMNEG SYNFAEIWQF PVHGSGSMSE SGGRLGLRGA QFGHNLSQFG TNREVSGDDP  60
VRLEQKMAHG NGARKRRYVE DESAKVVSTS SGNGNENDSD GKRIKTSGSR DENHNSKSEV  120
EPSSGKPVEQ NNQPPEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER MKILQDLVPG  180
CNKVIGKALV LDEIINYIQS LQQQVEFLSM KLEAVNSRMN PGIEVFPPKD FGQQTFDTAG  240
MPFGSQATGE YSRGTSPEWL HMQIGGGFER LT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438535.11e-163transcription factor BHLH089 isoform X1
RefseqXP_006483289.11e-163transcription factor BHLH089 isoform X1
SwissprotQ69WS32e-83BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2H5N8G11e-162A0A2H5N8G1_CITUN; Uncharacterized protein
TrEMBLV4TJK21e-162V4TJK2_9ROSI; Uncharacterized protein
STRINGXP_006483289.11e-163(Citrus sinensis)
STRINGXP_006438535.11e-163(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-102BIG PETAL P