PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_652_f_6
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 597aa    MW: 66419.2 Da    PI: 5.553
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_652_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-14372418455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Neem_652_f_6 372 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 418
                   7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.2E-192186IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625368417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-19370438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-12372417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.36E-15372422No hitNo description
Gene3DG3DSA:4.10.280.102.2E-19372436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17374423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MPFEHLRERD APPPRAEIFW LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKTVVCIPLL  60
DGVVEFGTTE KVPEDLGFIQ HVKTFFTDPQ HANNSHPPKP ALSGHSTSNP AASSEQPRFH  120
SPPIPAVYAA LDPPVNANPE DEDDEEDDDE EEQESDSEAE TGRNSRQDAA QNPQVVVPPV  180
AEPSELMQLE MSEDIRLGSP DDGSNNLDSD FHLLAVSQGE NPADQQRRAD SFKAESSRRW  240
PMLQEPMTSG LQAPLSGGQL PLDELTQEDT HYSQTVSTIL QKQPTRWTES SSAAYVIYST  300
QSAFAKWTNR SDHHLPIPVE GTSQWLLKYI LFSVPFLHSK YRDENSPKSR DAGGDAASRF  360
RKGTPQDELS ANHVLAERRR REKLNERFII LRSLVPFVTK MDKASILGDT IEYVKQLRKK  420
IQDLETRNKQ MEADQRSRMS ELQRTGTGSG SKDQRSGQTV LDRARVGTGP GSDKRKLRIV  480
EGSSGSAKPK TVDSPPPPQT QPQTETPTPT TVETSVQVSI IESDALVELQ CGYRVGLLLD  540
IMQMLREMLI EVIAAQSSLS NGVFTAQLRA KVKDNVNGRK ASIVEVKRAV HQLIPQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-15372431867Transcription factor MYC2
5gnj_B8e-15372431867Transcription factor MYC2
5gnj_E8e-15372431867Transcription factor MYC2
5gnj_F8e-15372431867Transcription factor MYC2
5gnj_G8e-15372431867Transcription factor MYC2
5gnj_I8e-15372431867Transcription factor MYC2
5gnj_M8e-15372431867Transcription factor MYC2
5gnj_N8e-15372431867Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376381ERRRRE
2377382RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279540.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A1L5YQR70.0A0A1L5YQR7_LITCN; BHLH2
STRINGEOX947960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94222836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-35bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]