PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_6527_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 407aa MW: 44646.8 Da PI: 9.8103

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6527_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00032	176	198	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H Neem_6527_f_3 176 ACSQCGEVFPKIESLELHQAVrH 198 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.808	175	203	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	175	198	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.63E-26	200	406	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.6E-15	201	405	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MALLTFLPES AESRKQQQPP KRKKKQQKQK QPSSWAQIKN LLTCKQIEGS RVHDPAKNAQ 60 GYSKLGSSCS SICSFKDVVH GNTKVVHRAD NSPESSTVGQ ETGLPSRKAV TGTSTRSAAR 120 SNGGGTYTSS SKGMQFRKLS GCYECHTIID ASSKYRNVLN LSAKIRFPSA RTTICACSQC 180 GEVFPKIESL ELHQAVRHAV SELGPEDSSR NIVEIIFKSS WLKKDSPMCK IERILKVHNT 240 QRTIQRFEDC RDAVKTRALN STRKNPRCAA DGNELLRFHC TTLSCNLGSR GSSSLCGSVP 300 GCSVCTIIRH GFQGKECKGV RTTASSGRAH DSLKNCTDER RAMLVCRVIA GRVKRVTDDA 360 PPEEDSVSAG SYDSVAGYAG IYSNFEELFV YNARAILPCF VVIYKSL

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MALLTFLPES AESRKQQQPP KRKKKQQKQK QPSSWAQIKN LLTCKQIEGS RVHDPAKNAQ  60
GYSKLGSSCS SICSFKDVVH GNTKVVHRAD NSPESSTVGQ ETGLPSRKAV TGTSTRSAAR  120
SNGGGTYTSS SKGMQFRKLS GCYECHTIID ASSKYRNVLN LSAKIRFPSA RTTICACSQC  180
GEVFPKIESL ELHQAVRHAV SELGPEDSSR NIVEIIFKSS WLKKDSPMCK IERILKVHNT  240
QRTIQRFEDC RDAVKTRALN STRKNPRCAA DGNELLRFHC TTLSCNLGSR GSSSLCGSVP  300
GCSVCTIIRH GFQGKECKGV RTTASSGRAH DSLKNCTDER RAMLVCRVIA GRVKRVTDDA  360
PPEEDSVSAG SYDSVAGYAG IYSNFEELFV YNARAILPCF VVIYKSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006473648.1	0.0	uncharacterized protein LOC102626182
TrEMBL	V4TFF4	0.0	V4TFF4_9ROSI; Uncharacterized protein
STRING	XP_006473648.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-153	C2H2-like zinc finger protein