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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Neem_6438_f_1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family |
HSF |
Protein Properties |
Length: 203aa MW: 23309.1 Da PI: 7.7912 |
Description |
HSF family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 112.7 | 2.5e-35 | 30 | 121 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97
Fl+k+y++++d+ +++++sw e++++fvv+ + efa+++Lp++Fkh+nf+SFvRQLn+YgFkk+ ++ weF++++F+kg k+ll++i
Neem_6438_f_1 30 FLTKTYQLVDDPLTDHIVSWGEDQTTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLNTYGFKKIVADR---------WEFANEYFRKGAKHLLSEI 116
9****************************************************************999.........******************* PP
XXXXX CS
HSF_DNA-bind 98 krkks 102
+r+ks
Neem_6438_f_1 117 HRRKS 121
***98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 203 aa
Download sequence Send
to blast |
MALCSAAAME KSCEEMVFSV DSQKAVPAPF LTKTYQLVDD PLTDHIVSWG EDQTTFVVWR 60 PPEFARDLLP NFFKHNNFSS FVRQLNTYGF KKIVADRWEF ANEYFRKGAK HLLSEIHRRK 120 SPQHNHQNHV KPVSSSFEQR SAATEPTQIR ELGRSSEDDD DGNINGEEQI KSSTVKLFGV 180 PLSGKKRLHP SARKIDDHDH QRL
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |