PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

Neem_6408_f_7

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 111aa MW: 13159.4 Da PI: 10.0787

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6408_f_7	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.6e-06	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Neem_6408_f_7 62 WKCDKCSKKYAVQSDWKAHQKTC 84 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.17E-6	49	92	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.9E-6	50	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MALDWKLFLK IYNLRQIHIY NPYMRVYICP EPSCVHHNPA RALGDLTGIK KHFSRKHGEK 60 KWKCDKCSKK YAVQSDWKAH QKTCGTREYK CDRGTIFSRL ILNPSIEHMH A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-21	58	99	3	44	Zinc finger protein JACKDAW
5b3h_F	2e-21	58	99	3	44	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019197559.1	1e-51	PREDICTED: protein indeterminate-domain 2-like
Refseq	XP_028073987.1	2e-51	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q8RWX7	4e-46	IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBL	A0A1R3KHT4	4e-50	A0A1R3KHT4_9ROSI; Uncharacterized protein
TrEMBL	A0A1U8NUW4	9e-50	A0A1U8NUW4_GOSHI; protein indeterminate-domain 2-like
TrEMBL	A0A2P5YNG6	1e-49	A0A2P5YNG6_GOSBA; Uncharacterized protein
STRING	XP_006480107.1	3e-50	(Citrus sinensis)
STRING	EOX94991	3e-50	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.2	2e-37	indeterminate(ID)-domain 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938]