PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Neem_6357_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

LBD

Protein Properties

Length: 301aa MW: 34248.2 Da PI: 5.1189

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6357_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.2	1.5e-39	10	110	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCaaCk++rr+C+++C+lapyfp +qpk f+n+hklFG+sn+lk+lk l+ e++++am+s++y+A++r + Pv+G+ g+i +l+ q+ q+++el++ Neem_6357_f_2 10 ACAACKYQRRRCSAECPLAPYFPPDQPKMFQNAHKLFGVSNILKILKILDSEQKPEAMRSIIYQANIRDKYPVHGCWGIICQLRYQIWQAEEELHA 105 7*********************************************************************************************** PP DUF260 97 lkeel 101 ++++l Neem_6357_f_2 106 VHAQL 110 *9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.501	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.1E-38	10	107	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009556	Biological Process	microsporogenesis
GO:0009786	Biological Process	regulation of asymmetric cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MTLKGGTSQA CAACKYQRRR CSAECPLAPY FPPDQPKMFQ NAHKLFGVSN ILKILKILDS 60 EQKPEAMRSI IYQANIRDKY PVHGCWGIIC QLRYQIWQAE EELHAVHAQL DIYRQHYQQQ 120 VQVSSMTDDV PSQLELGMAP PNGLSLFNHN PQPYSAVPAL PLSQHHSYSN NSYNSPYMDT 180 KDNVSNSMWF QHPYTTNNNN VNSIPMQSHL VASQPLAIQQ EVVQDYDEIH PFFDTIDDRQ 240 SYIDSKEAYE SSSLFSDFDV YESIFTCSSE ESLKDTTQSI EHVAENELKS AAACFSLTSV 300 N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-28	6	113	7	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-28	6	113	7	114	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006476673.1	1e-167	LOB domain-containing protein 27-like isoform X1
Swissprot	Q9STS6	5e-65	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A2H5NFN8	1e-166	A0A2H5NFN8_CITUN; Uncharacterized protein
STRING	XP_006476673.1	1e-167	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6303	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	6e-64	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]