PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6357_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 301aa    MW: 34248.2 Da    PI: 5.1189
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6357_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.21.5e-39101101101
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    aCaaCk++rr+C+++C+lapyfp +qpk f+n+hklFG+sn+lk+lk l+ e++++am+s++y+A++r + Pv+G+ g+i +l+ q+ q+++el++
  Neem_6357_f_2  10 ACAACKYQRRRCSAECPLAPYFPPDQPKMFQNAHKLFGVSNILKILKILDSEQKPEAMRSIIYQANIRDKYPVHGCWGIICQLRYQIWQAEEELHA 105
                    7*********************************************************************************************** PP

         DUF260  97 lkeel 101
                    ++++l
  Neem_6357_f_2 106 VHAQL 110
                    *9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.5019110IPR004883Lateral organ boundaries, LOB
PfamPF031959.1E-3810107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MTLKGGTSQA CAACKYQRRR CSAECPLAPY FPPDQPKMFQ NAHKLFGVSN ILKILKILDS  60
EQKPEAMRSI IYQANIRDKY PVHGCWGIIC QLRYQIWQAE EELHAVHAQL DIYRQHYQQQ  120
VQVSSMTDDV PSQLELGMAP PNGLSLFNHN PQPYSAVPAL PLSQHHSYSN NSYNSPYMDT  180
KDNVSNSMWF QHPYTTNNNN VNSIPMQSHL VASQPLAIQQ EVVQDYDEIH PFFDTIDDRQ  240
SYIDSKEAYE SSSLFSDFDV YESIFTCSSE ESLKDTTQSI EHVAENELKS AAACFSLTSV  300
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2861137114LOB family transfactor Ramosa2.1
5ly0_B4e-2861137114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476673.11e-167LOB domain-containing protein 27-like isoform X1
SwissprotQ9STS65e-65LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A2H5NFN81e-166A0A2H5NFN8_CITUN; Uncharacterized protein
STRINGXP_006476673.11e-167(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63032746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.16e-64LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]