PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_6353_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Trihelix | ||||||||
Protein Properties | Length: 145aa MW: 17325.1 Da PI: 10.7699 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.1 | 7.3e-16 | 19 | 88 | 2 | 63 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykk 63 Wt++e+ Li+a+++++ +l+rg+lk+ +Weev+ + ++ + +s qC++k+++l+kr + Neem_6353_f_1 19 WTHEETVNLIQAYQDRWYSLKRGNLKASQWEEVAVIValrcsyddHSNPSAKSGSQCRHKIKKLRKRLAA 88 ********************************************99********************9655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.121 | 11 | 83 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 8.8E-13 | 17 | 90 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MGLQCHKNLR MKKTQPNPWT HEETVNLIQA YQDRWYSLKR GNLKASQWEE VAVIVALRCS 60 YDDHSNPSAK SGSQCRHKIK KLRKRLAAEM REFAERLDRI EKRKIEMIRE SGRWRMEMES 120 KRIQMIVDSQ RKIVDIISNI FPGKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018818022.1 | 7e-33 | PREDICTED: trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A2Z6MMQ9 | 3e-36 | A0A2Z6MMQ9_TRISU; Uncharacterized protein | ||||
STRING | Solyc06g083430.1.1 | 2e-30 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400051788 | 2e-30 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10281 | 22 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24860.1 | 7e-19 | Trihelix family protein |