PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6251_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 173aa    MW: 19155.2 Da    PI: 8.8081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6251_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.0001133721054
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   + R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  Neem_6251_f_1 33 KERKEKLGERIVALQQLVSPY-----GKTDTASVLWEAMEYIQFL 72
                   667888899999999999999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.6E-92283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.352372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00732978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-122992IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-43377No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MMENKRSPCA VDQGSLSTLA SKRHKADLSI STKERKEKLG ERIVALQQLV SPYGKTDTAS  60
VLWEAMEYIQ FLHEQVKLVA MQCEVSSRLC YTLALLKMNG LSTCDLVLSA PYLQSTPTAK  120
VQELEQYSLR SRGLCLVPIS CTAGVARSNG ADIWAPIKTT TSPKLEKSMT QFH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006442818.18e-89transcription factor bHLH153
RefseqXP_006442819.18e-89transcription factor bHLH153
RefseqXP_006478624.18e-89transcription factor bHLH153
RefseqXP_006478627.18e-89transcription factor bHLH153
RefseqXP_024954143.18e-89transcription factor bHLH153
SwissprotQ7XJU25e-60BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A067FKP22e-87A0A067FKP2_CITSI; Uncharacterized protein
TrEMBLA0A2H5NX862e-87A0A2H5NX86_CITUN; Uncharacterized protein
TrEMBLV4VSH72e-87V4VSH7_9ROSI; Uncharacterized protein
STRINGXP_006478624.13e-88(Citrus sinensis)
STRINGXP_006442817.13e-88(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.23e-64bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]