PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_624_f_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Trihelix | ||||||||
Protein Properties | Length: 209aa MW: 22891.7 Da PI: 9.7506 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.9 | 1.7e-15 | 42 | 123 | 1 | 84 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +W++ v L+ea+++++ +r+klk+++Weev++++ ++ ++++qCk+k+e+++kry+ + +++ + s++ ++ + Neem_624_f_5 42 EWSEGAVSSLLEAYESKWVLRNRAKLKGHDWEEVARHVsaraNNTKSPKTQTQCKNKIESMKKRYRSESANADG------SSWLLYPR 123 5*************************************87766777788999***************9988876......24666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.6E-20 | 40 | 125 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MDKENNQENH PSLLLPNHKE ESPKKTFGGG GGSSNDRLKR DEWSEGAVSS LLEAYESKWV 60 LRNRAKLKGH DWEEVARHVS ARANNTKSPK TQTQCKNKIE SMKKRYRSES ANADGSSWLL 120 YPRLDLLLRG SSAAAPQPLP PPHQQQQLSV NPPLVLLETS QTAMEQPIPP APAVPLPPPP 180 QPAPPTGTAQ NSHGSNGVDH RTAKVSLCI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022743989.1 | 1e-72 | trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A371E9U6 | 3e-73 | A0A371E9U6_MUCPR; Trihelix transcription factor ASIL2 (Fragment) | ||||
STRING | POPTR_0003s19470.1 | 8e-72 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9859 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 2e-51 | sequence-specific DNA binding transcription factors |