PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6238_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 332aa    MW: 36597.5 Da    PI: 7.18
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6238_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47e-10242285755
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Neem_6238_f_2 242 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 285
                    5679*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.326235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-12236292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-11237289No hitNo description
SuperFamilySSF474592.49E-13238294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-12241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-7243285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MALANEIMGS SVQTCGFKGD LSSPGGSYGV DDYKKVVIDE GDGSEKTGGP VKNVAMSNSS  60
SPSSGNSNGY GFRAENYHQP TAPEEVHSLI NFKSGYDNFM HANASLLSFE QSERISHLKA  120
RNNRDDYSMW EGNDWNQQIN QKYNSDPRLM EEYNCFHTAS NCGFMINNNT TKENHGDWIY  180
SEATAVTDSI LESGSQDAAG SLRRPHTGES MRALKKQCTS TSTSSKKPKP KTVQPSKDPQ  240
SIAAKNRRER ISERLKILQE LVPNGSKVDL VTMLEKAISY VKFLQLQVKV LATDEFWPVQ  300
GGKAPDISQV REAIDAILSS SSSQRDRNSS SK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482386.11e-136transcription factor bHLH83-like
SwissprotQ9FJ001e-63BH086_ARATH; Putative transcription factor bHLH086
TrEMBLV4SXU21e-134V4SXU2_9ROSI; Uncharacterized protein
STRINGXP_006482386.11e-135(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42602854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.14e-56RHD SIX-LIKE 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Kim CM,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
    PLoS Genet., 2016. 12(8): p. e1006211
    [PMID:27494519]
  3. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]