PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_606_f_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | GRAS | ||||||||
Protein Properties | Length: 471aa MW: 52267 Da PI: 7.2588 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 251.5 | 3.2e-77 | 139 | 413 | 1 | 277 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshl 96 lv++L++cAeav+ +d++ a+alL++++ +a g+++qR+a++f+++L+ rla + + + + p+++s +se++ al+l +e++P ++f+h+ Neem_606_f_4 139 LVQQLIACAEAVACRDKAHASALLSEVRANALVFGTSFQRVASCFVQGLSDRLALvQPLGAVGVVGPTTKSIAVTSEKAEALSLVYEIFPQIQFGHF 235 689***************************************************9333344444455555555699999****************** PP GRAS 97 taNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 +aN Ilea+ege+ vH++D++++ +G QW +L+++La+R+ ++pp+lRiTg+g+ +e+l+++g+ L+ +A++l+++fef + v+k+le+ Neem_606_f_4 236 IANASILEAFEGESLVHVVDLGMTlglpHGRQWRNLMHSLANRSaKPPPRLRITGFGN----CTERLQSIGDELKCYADSLKLNFEFLM-VEKNLET 327 ********************99873333678*************78888*********....9*************************9.8****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 l+ ++++v+ gE+l+++++l+lh +++es + +vL+ +++lsP+v++++e++++hn++ Fl rf+eal+yysa+fdsl+a lp+ Neem_606_f_4 328 LQAKDINVQDGEVLVISSILHLHCVVKESRGALN---SVLQRLNKLSPRVFILAEHDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPK 413 **************************88877777...8***********************************************9986 PP | |||||||
2 | GRAS | 44.5 | 2.6e-14 | 413 | 469 | 317 | 374 |
GRAS 317 erleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+++aGF+pvp++ qak lrk++ +gy++ ee+g+lvlgWk++p+++vS+W+ Neem_606_f_4 413 KRMSRAGFQPVPIKM--IIQAKQWLRKFQiCEGYTIIEEKGCLVLGWKSKPIIAVSCWK 469 69***********75..679**************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.378 | 113 | 471 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-74 | 139 | 413 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MAPDYQWPPR FYLDDKNNEV IGLDLNFSAA GFISFFDAST SKSSSYAWSV SDETQDQKRL 60 KKTPVTDESS GSNSSLCSGG NNRITGSLSR LPRLQFRDHI WAYTQRYLAI EAMEEAALAM 120 MRGEETEVKD EGNGDGMKLV QQLIACAEAV ACRDKAHASA LLSEVRANAL VFGTSFQRVA 180 SCFVQGLSDR LALVQPLGAV GVVGPTTKSI AVTSEKAEAL SLVYEIFPQI QFGHFIANAS 240 ILEAFEGESL VHVVDLGMTL GLPHGRQWRN LMHSLANRSA KPPPRLRITG FGNCTERLQS 300 IGDELKCYAD SLKLNFEFLM VEKNLETLQA KDINVQDGEV LVISSILHLH CVVKESRGAL 360 NSVLQRLNKL SPRVFILAEH DSSHNGPFFL GRFMEALHYY SAIFDSLDAM LPKRMSRAGF 420 QPVPIKMIIQ AKQWLRKFQI CEGYTIIEEK GCLVLGWKSK PIIAVSCWKC S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-49 | 123 | 468 | 1 | 377 | Protein SCARECROW |
5b3h_D | 1e-49 | 123 | 468 | 1 | 377 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024042075.1 | 0.0 | DELLA protein GAI1 | ||||
TrEMBL | A0A067H3B1 | 0.0 | A0A067H3B1_CITSI; Uncharacterized protein | ||||
STRING | XP_006484335.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16018 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 1e-53 | GRAS family protein |