PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6001_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 192aa    MW: 22335.3 Da    PI: 6.1657
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6001_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.1e-0858802447
                     HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47
                     W++Ia +++ gRt++++k++w+ +
    Neem_6001_f_3 58 WSLIAGRLP-GRTGNDIKNFWNCH 80
                     *********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-105481IPR009057Homeodomain-like
SuperFamilySSF466898.16E-75688IPR009057Homeodomain-like
PfamPF002492.1E-55778IPR001005SANT/Myb domain
CDDcd001671.09E-45881No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGELPSSKYQ EREFCRRRSR SHYQASPALG EQASLLNTTL LYKRKLHAKR VEEKDVLWSL  60
IAGRLPGRTG NDIKNFWNCH LSKKLINNAD QEHKVEVLKP QGRYRAANLQ SHEESSLSTP  120
LILQGVEVDE QEIRMLQREE SKENIPGHVS ELGTMMSDWP IDFHLEQVRV TDKDSSIWDF  180
VFDDLIFDME II
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLV4U3138e-30V4U313_9ROSI; Uncharacterized protein
STRINGXP_006443316.11e-30(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-13myb domain protein 113