PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_5945_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 254aa MW: 28814.5 Da PI: 4.996 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.7 | 1.9e-20 | 55 | 99 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 + +nks qvtfskRr+g++ KA EL++LC+aev +i+fs++gk+ Neem_5945_f_3 55 KLQNKSSLQVTFSKRRTGLFSKAMELCILCGAEVGIIVFSPNGKI 99 5689***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.7E-31 | 46 | 105 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.544 | 46 | 106 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-26 | 47 | 122 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.06E-32 | 47 | 119 | No hit | No description |
PRINTS | PR00404 | 2.0E-19 | 48 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.8E-22 | 57 | 100 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-19 | 68 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-19 | 83 | 104 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MLPSITTEKE ELKPKPLSIT MSGSNTNNNG DSSSNNENQK TRKATRGRQK IEIKKLQNKS 60 SLQVTFSKRR TGLFSKAMEL CILCGAEVGI IVFSPNGKIF VVGHPDFDTV LNRYLDENHY 120 EQAAAVPCVQ QHNREYEEAL IELDMEKKKA KMIEEEKEKN KSGRAWWEES IDGMGIEELE 180 EYVKAMKKLR SEVQSRVNEM MMLNDYLMPN NINIMNQEDG FGNIVSSSNN EDISVNGGCI 240 ATDFDFGEHF LNNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 2e-14 | 47 | 118 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_B | 2e-14 | 47 | 118 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_I | 2e-14 | 47 | 118 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_J | 2e-14 | 47 | 118 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_A | 2e-14 | 47 | 118 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_B | 2e-14 | 47 | 118 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_C | 2e-14 | 47 | 118 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_D | 2e-14 | 47 | 118 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_I | 2e-14 | 47 | 118 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_J | 2e-14 | 47 | 118 | 1 | 72 | Myocyte-specific enhancer factor 2A |
5f28_A | 2e-14 | 47 | 118 | 2 | 73 | MEF2C |
5f28_B | 2e-14 | 47 | 118 | 2 | 73 | MEF2C |
5f28_C | 2e-14 | 47 | 118 | 2 | 73 | MEF2C |
5f28_D | 2e-14 | 47 | 118 | 2 | 73 | MEF2C |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006422729.2 | 4e-95 | agamous-like MADS-box protein AGL23 | ||||
TrEMBL | V4U9K6 | 7e-94 | V4U9K6_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006422729.1 | 1e-94 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15814 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-33 | AGAMOUS-like 62 |