PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5653_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 185aa    MW: 21615.2 Da    PI: 9.4071
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5653_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1361.5e-1178133560
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                    ++ rr+++NRe+ArrsR RK++ +e+L++ v  L  eN++L ++l     ++++++
  Neem_5653_f_1  78 RKRRRMISNRESARRSRMRKQKHLENLRNQVNRLRVENRELTNRLRFVLYHCERVQ 133
                    5789*************************************999876666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.1E-1374138IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.78376122IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.2E-976123No hitNo description
PfamPF001701.3E-878123IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-1078125No hitNo description
CDDcd147023.25E-1979129No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MLSAFPAMFS SETMIGNHFP AFENGFTPWD CEDPFSTPNQ SPNPVVSSSG SDEPNQNQTH  60
STSVSDDPNP TVSIIDERKR RRMISNRESA RRSRMRKQKH LENLRNQVNR LRVENRELTN  120
RLRFVLYHCE RVQTDNDRLR SEHSMLRQRL SEIRQILVYR QLQQVTSPWL CNSTVTSEQI  180
PSLIT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17781RKRRR
27798RKRRRMISNRESARRSRMRKQK
39097RRSRMRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024036372.11e-100basic leucine zipper 4
TrEMBLV4RWX25e-99V4RWX2_9ROSI; Uncharacterized protein
STRINGXP_006426133.11e-100(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.16e-40basic leucine-zipper 5