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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Neem_5646_f_8 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family | bHLH | ||||||||
| Protein Properties | Length: 240aa MW: 27129.1 Da PI: 9.2149 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 43.3 | 6.6e-14 | 71 | 123 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++++h +Er+RR+++ + ++ Lr+llP + ++K s ++ +Av+YIk+L+
Neem_5646_f_8 71 KKMMHRDIERQRRQEMATLYASLRSLLPLEF--IKGKRSTSDQMNEAVNYIKHLE 123
6899*************************65..********************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 1.57E-13 | 69 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 14.399 | 70 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 5.5E-11 | 71 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 4.9E-11 | 72 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 4.28E-9 | 73 | 127 | No hit | No description |
| SMART | SM00353 | 1.1E-5 | 76 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 240 aa Download sequence Send to blast |
MFPLHTGDEL FFNNLSSTSH QQYKIPQDLI LGHASVDGCI INDNMGKSRR PKTRSMDTEK 60 IPVDNKNNNN KKMMHRDIER QRRQEMATLY ASLRSLLPLE FIKGKRSTSD QMNEAVNYIK 120 HLEKKIKGLG GKRDEIKRLS NLSASAAVSQ IGSSEANTSP CSIIVRPSVV GVEIVYSCRY 180 LEQGLPLSRL LEILLDEGLC VVNCVSTRVN ERLLHTIQTE VNDPTSFNLS ELQQKLTQMK |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006421794.1 | 1e-114 | transcription factor bHLH36 | ||||
| Swissprot | Q9FLI1 | 3e-48 | BH036_ARATH; Transcription factor bHLH36 | ||||
| TrEMBL | V4U702 | 1e-113 | V4U702_9ROSI; Uncharacterized protein | ||||
| STRING | XP_006421794.1 | 1e-114 | (Citrus clementina) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM2968 | 27 | 67 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G51780.1 | 9e-50 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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