PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5548_a_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 64aa    MW: 7214.58 Da    PI: 10.8132
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5548_a_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA65.27e-211145135
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                   C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++
  Neem_5548_a_1 11 CADCKTTKTPLWRGGPAGPKSLCNACGIRYRKKKK 45
                   ********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-16557IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.37E-15548No hitNo description
CDDcd002022.35E-111044No hitNo description
Gene3DG3DSA:3.30.50.106.6E-181045IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.3341141IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401136IPR000679Zinc finger, GATA-type
PfamPF003207.2E-191145IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MMNENNNLKF CADCKTTKTP LWRGGPAGPK SLCNACGIRY RKKKKVVEGL KKRTEKKKDK  60
TTAV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976332.12e-25PREDICTED: GATA transcription factor 15
RefseqXP_021282291.12e-25GATA transcription factor 15-like
SwissprotQ8LG107e-18GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A061F4J31e-23A0A061F4J3_THECC; GATA transcription factor 15, putative
STRINGEOY115972e-24(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144841622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.19e-19GATA transcription factor 23
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]