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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_5359_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WRKY | ||||||||
Protein Properties | Length: 297aa MW: 33331.7 Da PI: 9.8471 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.3 | 3.6e-29 | 238 | 294 | 3 | 58 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 D y+WrKYGqK++kgs++ rsYYrC+ + +Cp++k+ver+ edp+++++tY g+Hnh Neem_5359_f_2 238 DDYTWRKYGQKPIKGSPHLRSYYRCSGTsSCPARKRVERCVEDPTMLVVTYAGDHNH 294 99************************988**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 5.6E-8 | 197 | 234 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.8E-30 | 228 | 294 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.613 | 231 | 294 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-25 | 232 | 294 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.6E-33 | 236 | 296 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-24 | 238 | 294 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MNPSWEFSVQ EIAESSFRHA NHLFSCISNQ NQKSIQEVSL IAQDAVNGFA KLLTLLDGSM 60 PPYCKRIRKG PLRNSSDVNP IQFMDSPISM SQNSKCNSNQ SHIVGQLMPL TSRVLITTGG 120 FNLYGKNQKL ALQYYYSETN PVGSSKLIRG FSHSSQQMNL SKTSSEENHV DKKITHHSSS 180 QILASRDESS TFYKSKEASA RYVASTGACH CSKQWKLRIR KIACAPAVSN KQSDIPPDDY 240 TWRKYGQKPI KGSPHLRSYY RCSGTSSCPA RKRVERCVED PTMLVVTYAG DHNHLRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-16 | 234 | 294 | 12 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023921503.1 | 1e-106 | probable WRKY transcription factor 15 | ||||
Swissprot | O22176 | 1e-40 | WRK15_ARATH; Probable WRKY transcription factor 15 | ||||
TrEMBL | A0A0D2S2Y1 | 1e-100 | A0A0D2S2Y1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G199500.1 | 1e-101 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20136 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 4e-43 | WRKY DNA-binding protein 15 |
Publications ? help Back to Top | |||
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