PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5271_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 177aa    MW: 20423.2 Da    PI: 9.7697
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5271_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.8e-122873348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rW+ eEd++l+++++ +G + W+ I++ +g  R++ +c  rw ++l
    Neem_5271_f_1 28 RWSNEEDDRLIKYIQTHGARGWRNIPKAIGVCRSPASCHGRWINHL 73
                     9*****************************99***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8152577IPR017930Myb domain
SMARTSM007172.0E-72575IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-162776IPR009057Homeodomain-like
SuperFamilySSF466898.61E-1927102IPR009057Homeodomain-like
CDDcd001676.73E-82873No hitNo description
PfamPF139211.2E-162989No hitNo description
PROSITE profilePS500904.72874104IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-677104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEKFDCSFSS RDVPNVAKEL GGLSKWRRWS NEEDDRLIKY IQTHGARGWR NIPKAIGVCR  60
SPASCHGRWI NHLRPNINHS KITQEEEQKI IKIYNAVGTR NYWRSTIMKK YGNGEIDRYA  120
IDINKPKVLN RDNGEVLKIE EVNKGGGTST RQMNMYIDEE LDLELRIGPL GQHGAKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.12e-17myb domain protein 7