PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_524_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 398aa    MW: 43765.1 Da    PI: 9.18
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_524_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-057597123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C++C+k F r  nL+ H r H
  Neem_524_f_2 75 FVCEICNKGFQRDQNLQLHRRGH 97
                  89*******************88 PP
2zf-C2H212.60.00043151173123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC++C+k +  +s+ k H +t+
  Neem_524_f_2 151 WKCEKCSKIYAVQSDWKAHSKTC 173
                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.58E-67497No hitNo description
Gene3DG3DSA:3.30.160.601.2E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0177597IPR015880Zinc finger, C2H2-like
PfamPF121716.0E-57597IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9497597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355280116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.58E-6146171No hitNo description
SMARTSM00355170151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MFPAAMSNST SLSEEASVSS GTRVQDFGGF IPVVSTNSPQ QPQKAKKKRS LPGNPDPDAE  60
VIALSPKTLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNSKD IRKRAYVCPE  120
PSCVHHHPSR ALGDLTGIKK HYCRKHGEKK WKCEKCSKIY AVQSDWKAHS KTCGTREYRC  180
DCGTLFSRKD SFITHRAFCD ALAEESARIS ANQLSTANPN VHHLHLASQT HPSSLLPFTT  240
HIALTPWDTP QNPNPNNTHH LSATALLQKA ATIGSATASH QVQSMGHMTQ LNMGELARID  300
SVSHISPGTY MGFTSGNLST WQKSDRLTRD FLGLTGDGNG NGNENVNGGV NVSVNLRDAL  360
TYTAGLEFQP YERGHSLLKP QGFGFAAEPP ASETWGDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36147211367Zinc finger protein JACKDAW
5b3h_F2e-36147211367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617241e-128AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021281006.10.0protein indeterminate-domain 12
SwissprotO227591e-139IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A061DRD10.0A0A061DRD1_THECC; Indeterminate(ID)-domain 12
STRINGEOX946360.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-132indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]