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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_5184_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 116aa MW: 12979.7 Da PI: 8.6813 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.4 | 6.7e-08 | 11 | 55 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a +++ ++ +W+ Iar +g ++ ++k ++ Neem_5184_f_3 11 SWTPKQNKLFEKALALYDKDtpdRWENIARALGGAKSVAEVKRHY 55 7********************************889********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.55 | 7 | 63 | IPR017884 | SANT domain |
SMART | SM00717 | 3.2E-6 | 8 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.22E-11 | 10 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-5 | 11 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.82E-5 | 12 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MSSSRNSSSS SWTPKQNKLF EKALALYDKD TPDRWENIAR ALGGAKSVAE VKRHYEILVE 60 DLNHIESGRV PIPNYKCTGS TYNASHEESY GKAEKLVKGD REIIIAALII CKLINL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-30 | 1 | 80 | 1 | 78 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423283.1 | 3e-43 | protein RADIALIS-like 3 | ||||
Refseq | XP_006469147.1 | 3e-43 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 9e-34 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A067E8G3 | 7e-42 | A0A067E8G3_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PY89 | 7e-42 | A0A2H5PY89_CITUN; Uncharacterized protein | ||||
TrEMBL | V4RQ20 | 7e-42 | V4RQ20_9ROSI; Uncharacterized protein | ||||
STRING | XP_006469147.1 | 1e-42 | (Citrus sinensis) | ||||
STRING | XP_006423283.1 | 1e-42 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 3e-33 | RAD-like 6 |