PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5076_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 574aa    MW: 63245.2 Da    PI: 7.3567
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5076_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.9e-09380427455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Neem_5076_f_5 380 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 427
                    8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-17374445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-10374431No hitNo description
Gene3DG3DSA:4.10.280.101.2E-16376444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663376426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-6380427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10382432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MENDLFLNAG VPAPAIHFEP TSSSQMPTWH SFSSAMEIQP NELNCSSEQS SDCFFNPNWE  60
KSTDQGLHFD SALSSMVSSP AASNSNISNE SFVIRELIGK LGNIRNSGEI SPHSFASYMN  120
NNGNNCASTT TTTNSCYTTP LNSPPKLNLP IMDHLVKEKL PSLGNSMTLD SSVAEFSADP  180
GFAERAARFS RFGSRSFNGR TSQLPPNNPE FGFRSNAFMG NQKLSRVSSS PSLKVLGSQA  240
NGIQGNKNSP LQDRSDLANS QEESSVSEQV QNGNAGLKTL NDFNSKKRKA VSKGKGKEPA  300
AFPSANNTKL ADGNDNCNSN NKRCKPNEGN ENSHVKADEE TKGEAKNAGD DKQPKTNTKP  360
PEPPKDYIHV RARRGQATDS HSLAERVRRE KISERMKLLQ DLVPGCNKVT GKALMLDEII  420
NYVQSLQRQV EFLSMKLASV NTRLDFNVDT LMSKDIYQPN KPLPHPMFQL DSSVSAFFSH  480
QPQQNPALHG NVSNRTMTQF PVDQPLDTAL SQNLNMQLPQ LNHFTESIPQ YPNFCEDDLQ  540
SIVQMGFGQN PNGETSIQSQ SFLGKKINQF HWKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021273524.10.0transcription factor bHLH62
TrEMBLA0A061DLW80.0A0A061DLW8_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOX937990.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.17e-74bHLH family protein