PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5021_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NF-YA
Protein Properties Length: 353aa    MW: 39079.6 Da    PI: 8.0651
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5021_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA994.7e-31184240158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    d p++VN+KQy++Il+RRq+Rakle++++l  k+rkpylheSRh hAl+R Rg gGrF
  Neem_5021_f_1 184 DGPIFVNPKQYHGILRRRQSRAKLEAQNRL-VKTRKPYLHESRHIHALNRIRGAGGRF 240
                    57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.0E-35182243IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.959183243IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-22186208IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-26186240IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-22217240IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MPHKNFDQGS VHTKPYFAIS CPSWWTSNEQ QMPQSLSKSI SLKTVSPHKP FRDGKYLGLQ  60
LPDQESSSAQ SIGQSHNEMV AADGSNSQDQ CISSDSGQDE SCGKGVEGQM KPVFLISNSE  120
NVFSQPHADY NHSMVHTSYP CGDRYFGGLF SPYGPQTLIH PQIGSHVVGI APARVPLPLD  180
PAEDGPIFVN PKQYHGILRR RQSRAKLEAQ NRLVKTRKPY LHESRHIHAL NRIRGAGGRF  240
LSKKKLHQSD PSSTSSSSHL HQKNSMAEFD SRSGTVECIA STTTCSDITS ISNHDVIFQQ  300
PDTGISGISV HMQNNGRLMH CASVVRCEER FYVFSLFGYQ DTAITFAPEY SLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-19186253474NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045960.11e-137PREDICTED: nuclear transcription factor Y subunit A-3-like
TrEMBLB9HDV61e-135B9HDV6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s14740.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1809668
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.14e-40nuclear factor Y, subunit A5