PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_5009_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 23027.9 Da PI: 11.1023 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42 | 2.3e-13 | 85 | 129 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 G+r+++ +grW+ e+++ + r +lg+++taeeA + +++a kl+g Neem_5009_f_1 85 GIRQRP-WGRWATEVKH------SgVRLWLGTYDTAEEAVRVYDNATIKLRG 129 9*****.*******888......44*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.52 | 82 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-24 | 82 | 143 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-22 | 82 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-8 | 83 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-17 | 83 | 139 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-8 | 85 | 129 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.00E-23 | 85 | 139 | No hit | No description |
PRINTS | PR00367 | 2.3E-8 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MNNSGVDTVR RVIRIPTTDH NTTDSSSNKD RQFSHRQNPW HHYVNETYIK LTPNKNSNTI 60 VVANNKKRIS TNASVCPRPI KEFCGIRQRP WGRWATEVKH SGVRLWLGTY DTAEEAVRVY 120 DNATIKLRGP NTLTNFSTSA LQKVKRKRAR PRNLNKSIVQ GNESNNFSTS TFVLNFRTHS 180 NTETEKEKTL MKSADKPTTI V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-15 | 83 | 136 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016731442.1 | 1e-43 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
Refseq | XP_017636364.1 | 6e-44 | PREDICTED: ethylene-responsive transcription factor CRF4 isoform X2 | ||||
TrEMBL | A0A1U8MX83 | 2e-42 | A0A1U8MX83_GOSHI; ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A2P5VWK0 | 2e-42 | A0A2P5VWK0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G271200.1 | 1e-42 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-27 | cytokinin response factor 4 |