PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4869_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 138aa    MW: 15317.1 Da    PI: 9.7784
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4869_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.7e-101257245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     g+WT+e  + + +a + + ++   +W+ +a+ +g g+t++++k ++ 
    Neem_4869_f_1 12 GSWTAEQNKAFERALAVFDKDtpdRWHNVAKAVG-GKTAEEVKRHYE 57
                     89********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.791964IPR017884SANT domain
SMARTSM007172.2E-91062IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-51266IPR009057Homeodomain-like
SuperFamilySSF466895.38E-131268IPR009057Homeodomain-like
PfamPF002491.9E-71257IPR001005SANT/Myb domain
CDDcd001678.32E-81460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MASSSISSRG SGSWTAEQNK AFERALAVFD KDTPDRWHNV AKAVGGKTAE EVKRHYELLV  60
EDIKHIESGH VPFPKYRTPG GSSNGNMSDR FGYPSKKKHF RSPKPNSALC GREDEEHEAP  120
LKLLQARILT NKDPSSVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-37782379RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896724.14e-49protein RADIALIS-like 1
SwissprotF4JVB81e-39RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A2R6RHD72e-46A0A2R6RHD7_ACTCH; Protein RADIALIS-like
STRINGevm.model.supercontig_62.1571e-48(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-41RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]